Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CMR26_RS17005 Genome accession   NZ_CP023414
Coordinates   3419820..3420338 (+) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain BS-37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3414820..3425338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS16985 (CMR26_17005) - 3415898..3416104 (+) 207 WP_004392973.1 DUF951 domain-containing protein -
  CMR26_RS16990 (CMR26_17010) - 3416151..3418154 (+) 2004 WP_032868214.1 molybdopterin-dependent oxidoreductase -
  CMR26_RS16995 (CMR26_17015) ychF 3418281..3419381 (+) 1101 WP_108725199.1 redox-regulated ATPase YchF -
  CMR26_RS17000 (CMR26_17020) rpsF 3419493..3419780 (+) 288 WP_004392977.1 30S ribosomal protein S6 -
  CMR26_RS17005 (CMR26_17025) ssbA 3419820..3420338 (+) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  CMR26_RS17010 (CMR26_17030) rpsR 3420382..3420621 (+) 240 WP_004392983.1 30S ribosomal protein S18 -
  CMR26_RS17015 (CMR26_17035) - 3420808..3421389 (+) 582 WP_020958118.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  CMR26_RS17020 (CMR26_17040) - 3421386..3421943 (+) 558 WP_020958117.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  CMR26_RS17025 (CMR26_17045) xth 3421940..3422698 (+) 759 WP_020958116.1 exodeoxyribonuclease III -
  CMR26_RS17030 (CMR26_17050) - 3422761..3423705 (+) 945 WP_007409892.1 LacI family DNA-binding transcriptional regulator -
  CMR26_RS17035 (CMR26_17055) - 3423757..3424137 (+) 381 WP_025285587.1 VOC family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=246914 CMR26_RS17005 WP_004392979.1 3419820..3420338(+) (ssbA) [Bacillus velezensis strain BS-37]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=246914 CMR26_RS17005 WP_004392979.1 3419820..3420338(+) (ssbA) [Bacillus velezensis strain BS-37]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTCACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment