Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CMR26_RS04590 Genome accession   NZ_CP023414
Coordinates   873617..873952 (-) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain BS-37     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 868617..878952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMR26_RS04540 (CMR26_04535) comGC 868850..869116 (+) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  CMR26_RS04545 (CMR26_04540) comGD 869106..869543 (+) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  CMR26_RS04550 (CMR26_04545) comGE 869527..869841 (+) 315 WP_007408323.1 competence type IV pilus minor pilin ComGE -
  CMR26_RS04555 (CMR26_04550) comGF 869750..870250 (+) 501 WP_258566475.1 competence type IV pilus minor pilin ComGF -
  CMR26_RS04560 (CMR26_04555) comGG 870251..870628 (+) 378 WP_108724823.1 competence type IV pilus minor pilin ComGG Machinery gene
  CMR26_RS04565 (CMR26_04560) - 870685..870864 (+) 180 WP_003153093.1 YqzE family protein -
  CMR26_RS04570 (CMR26_04565) - 870904..871233 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CMR26_RS04575 (CMR26_04570) tapA 871492..872163 (+) 672 WP_085342189.1 amyloid fiber anchoring/assembly protein TapA -
  CMR26_RS04580 (CMR26_04575) sipW 872135..872704 (+) 570 WP_085342188.1 signal peptidase I SipW -
  CMR26_RS04585 (CMR26_04580) tasA 872784..873569 (+) 786 WP_007408329.1 biofilm matrix protein TasA -
  CMR26_RS04590 (CMR26_04585) sinR 873617..873952 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CMR26_RS04595 (CMR26_04590) sinI 873986..874159 (-) 174 WP_003153105.1 anti-repressor SinI Regulator
  CMR26_RS04600 (CMR26_04595) - 874336..875130 (-) 795 WP_007612541.1 YqhG family protein -
  CMR26_RS04605 (CMR26_04600) - 875152..876822 (-) 1671 WP_031378948.1 DEAD/DEAH box helicase -
  CMR26_RS04610 (CMR26_04605) gcvT 877246..878346 (+) 1101 WP_032866432.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=246873 CMR26_RS04590 WP_003153104.1 873617..873952(-) (sinR) [Bacillus velezensis strain BS-37]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=246873 CMR26_RS04590 WP_003153104.1 873617..873952(-) (sinR) [Bacillus velezensis strain BS-37]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment