Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CMR26_RS04540 | Genome accession | NZ_CP023414 |
| Coordinates | 868850..869116 (+) | Length | 88 a.a. |
| NCBI ID | WP_042635730.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain BS-37 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 863850..874116
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CMR26_RS04520 (CMR26_04515) | - | 864120..865421 (-) | 1302 | WP_108724822.1 | hemolysin family protein | - |
| CMR26_RS04525 (CMR26_04520) | - | 865567..866517 (+) | 951 | WP_032870601.1 | magnesium transporter CorA family protein | - |
| CMR26_RS04530 (CMR26_04525) | comGA | 866709..867779 (+) | 1071 | WP_012117985.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CMR26_RS04535 (CMR26_04530) | comGB | 867766..868803 (+) | 1038 | WP_032866436.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CMR26_RS04540 (CMR26_04535) | comGC | 868850..869116 (+) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CMR26_RS04545 (CMR26_04540) | comGD | 869106..869543 (+) | 438 | WP_012117983.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CMR26_RS04550 (CMR26_04545) | comGE | 869527..869841 (+) | 315 | WP_007408323.1 | competence type IV pilus minor pilin ComGE | - |
| CMR26_RS04555 (CMR26_04550) | comGF | 869750..870250 (+) | 501 | WP_258566475.1 | competence type IV pilus minor pilin ComGF | - |
| CMR26_RS04560 (CMR26_04555) | comGG | 870251..870628 (+) | 378 | WP_108724823.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| CMR26_RS04565 (CMR26_04560) | - | 870685..870864 (+) | 180 | WP_003153093.1 | YqzE family protein | - |
| CMR26_RS04570 (CMR26_04565) | - | 870904..871233 (-) | 330 | WP_012117979.1 | DUF3889 domain-containing protein | - |
| CMR26_RS04575 (CMR26_04570) | tapA | 871492..872163 (+) | 672 | WP_085342189.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CMR26_RS04580 (CMR26_04575) | sipW | 872135..872704 (+) | 570 | WP_085342188.1 | signal peptidase I SipW | - |
| CMR26_RS04585 (CMR26_04580) | tasA | 872784..873569 (+) | 786 | WP_007408329.1 | biofilm matrix protein TasA | - |
| CMR26_RS04590 (CMR26_04585) | sinR | 873617..873952 (-) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 9721.32 Da Isoelectric Point: 6.2027
>NTDB_id=246870 CMR26_RS04540 WP_042635730.1 868850..869116(+) (comGC) [Bacillus velezensis strain BS-37]
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
MLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ
Nucleotide
Download Length: 267 bp
>NTDB_id=246870 CMR26_RS04540 WP_042635730.1 868850..869116(+) (comGC) [Bacillus velezensis strain BS-37]
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
ATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
74.648 |
80.682 |
0.602 |