Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Bateq7PJ16_RS22370 Genome accession   NZ_CP023409
Coordinates   4192912..4193430 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain 7PJ-16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4187912..4198430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS22340 (Bateq7PJ16_4471) yyaJ 4188415..4189770 (+) 1356 WP_049140536.1 MFS transporter -
  Bateq7PJ16_RS22345 (Bateq7PJ16_4472) maa 4189804..4190358 (-) 555 WP_159377185.1 sugar O-acetyltransferase -
  Bateq7PJ16_RS22350 (Bateq7PJ16_4473) yyaH 4190376..4190756 (-) 381 WP_159377186.1 VOC family protein -
  Bateq7PJ16_RS22355 (Bateq7PJ16_4474) ccpB 4190812..4191747 (-) 936 WP_159377187.1 transcriptional regulator CcpB -
  Bateq7PJ16_RS22360 (Bateq7PJ16_4475) xth 4191806..4192564 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  Bateq7PJ16_RS22365 rpsR 4192629..4192868 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  Bateq7PJ16_RS22370 (Bateq7PJ16_4476) ssbA 4192912..4193430 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  Bateq7PJ16_RS22375 (Bateq7PJ16_4477) rpsF 4193471..4193758 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  Bateq7PJ16_RS22380 (Bateq7PJ16_4478) ychF 4193869..4194969 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  Bateq7PJ16_RS22385 (Bateq7PJ16_4479) yyaE 4195096..4197099 (-) 2004 WP_124047754.1 molybdopterin-dependent oxidoreductase -
  Bateq7PJ16_RS22390 (Bateq7PJ16_4480) yyzM 4197150..4197356 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=246832 Bateq7PJ16_RS22370 WP_003219228.1 4192912..4193430(-) (ssbA) [Bacillus subtilis strain 7PJ-16]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=246832 Bateq7PJ16_RS22370 WP_003219228.1 4192912..4193430(-) (ssbA) [Bacillus subtilis strain 7PJ-16]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment