Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   CNR27_RS05325 Genome accession   NZ_CP023406
Coordinates   1170102..1170965 (-) Length   287 a.a.
NCBI ID   WP_096297259.1    Uniprot ID   -
Organism   Luteimonas chenhongjianii strain 100111     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1165102..1175965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNR27_RS05315 (CNR27_05315) - 1168068..1169015 (+) 948 WP_096297257.1 Nudix family hydrolase -
  CNR27_RS05320 (CNR27_05320) coaE 1169442..1170089 (-) 648 WP_096297258.1 dephospho-CoA kinase -
  CNR27_RS05325 (CNR27_05325) pilD 1170102..1170965 (-) 864 WP_096297259.1 A24 family peptidase Machinery gene
  CNR27_RS05330 (CNR27_05330) pilC 1170979..1172256 (-) 1278 WP_096297260.1 type II secretion system F family protein Machinery gene
  CNR27_RS05335 (CNR27_05335) pilB 1172385..1174109 (-) 1725 WP_096297261.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CNR27_RS05340 (CNR27_05340) - 1174439..1174906 (-) 468 WP_096297262.1 pilin -
  CNR27_RS05345 (CNR27_05345) - 1175106..1175825 (-) 720 WP_096297263.1 hypothetical protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31313.11 Da        Isoelectric Point: 7.9669

>NTDB_id=246730 CNR27_RS05325 WP_096297259.1 1170102..1170965(-) (pilD) [Luteimonas chenhongjianii strain 100111]
MAFLDQNPALGFPLAAGFGLLVGSFLNVVILRLPRRMEWQWKRDSREILGEPELYDPPPPGIVVERSHCPHCGHQLSWYE
NIPVLSWLALRGKCRSCKAPISIQYPAVELLTMLLFVACVWQFGFGWQGFGALVLTSFLIALSGIDIRTQLLPDSLTLPL
MWLGLIASLDNLYMPAKPALLGAVVGYVSLWTVWWLFKQATGKEGMGHGDFKLLAALGAWCGLSGLLPIILLSAVAGAVI
GSIMLAVQGRDRATPIPFGPYLAIAGWVTFMWGHDLIGAYSRVAGLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=246730 CNR27_RS05325 WP_096297259.1 1170102..1170965(-) (pilD) [Luteimonas chenhongjianii strain 100111]
ATGGCATTCCTCGACCAGAACCCCGCGCTCGGATTCCCGCTCGCCGCAGGCTTCGGCCTGCTGGTGGGCAGCTTCCTCAA
TGTCGTGATCCTGCGCCTGCCGCGGCGCATGGAGTGGCAGTGGAAGCGTGATTCGCGCGAGATCCTCGGGGAACCGGAGC
TCTATGATCCGCCGCCGCCAGGGATCGTCGTCGAGCGGTCCCATTGCCCGCATTGCGGGCACCAGCTGTCGTGGTACGAG
AACATCCCGGTCCTGAGCTGGCTGGCGCTGCGTGGCAAGTGCCGCAGCTGCAAGGCGCCGATTTCGATCCAGTATCCGGC
GGTCGAGCTGTTGACGATGCTGCTGTTCGTGGCCTGCGTCTGGCAGTTCGGCTTCGGCTGGCAGGGCTTCGGCGCGCTGG
TGCTGACCAGCTTCCTGATCGCACTGTCGGGCATTGACATCCGCACCCAGCTGCTGCCGGACTCGCTGACGCTGCCACTG
ATGTGGCTTGGGTTGATCGCCAGTCTCGACAACCTCTACATGCCGGCCAAACCCGCGCTGCTCGGAGCCGTGGTGGGCTA
TGTGAGCCTGTGGACGGTCTGGTGGCTGTTCAAGCAGGCCACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGT
TGGCTGCGCTCGGTGCATGGTGCGGGTTGAGCGGGCTGCTGCCGATCATCCTGTTGTCGGCCGTGGCTGGCGCGGTCATC
GGGTCGATCATGCTCGCGGTGCAGGGCCGTGACCGCGCCACGCCGATCCCGTTCGGGCCCTATCTGGCCATCGCCGGCTG
GGTGACCTTCATGTGGGGGCACGACCTGATCGGCGCCTACTCGCGTGTCGCCGGACTCGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(133-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

49.129

100

0.491
  pilD Vibrio cholerae strain A1552

50.73

95.47

0.484
  pilD Vibrio campbellii strain DS40M4

48.763

98.606

0.481
  pilD Acinetobacter nosocomialis M2

49.11

97.909

0.481
  pilD Neisseria gonorrhoeae MS11

50.193

90.244

0.453

Multiple sequence alignment