Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CNR27_RS05330 | Genome accession | NZ_CP023406 |
| Coordinates | 1170979..1172256 (-) | Length | 425 a.a. |
| NCBI ID | WP_096297260.1 | Uniprot ID | A0A290XCP4 |
| Organism | Luteimonas chenhongjianii strain 100111 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1165979..1177256
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNR27_RS05315 (CNR27_05315) | - | 1168068..1169015 (+) | 948 | WP_096297257.1 | Nudix family hydrolase | - |
| CNR27_RS05320 (CNR27_05320) | coaE | 1169442..1170089 (-) | 648 | WP_096297258.1 | dephospho-CoA kinase | - |
| CNR27_RS05325 (CNR27_05325) | pilD | 1170102..1170965 (-) | 864 | WP_096297259.1 | A24 family peptidase | Machinery gene |
| CNR27_RS05330 (CNR27_05330) | pilC | 1170979..1172256 (-) | 1278 | WP_096297260.1 | type II secretion system F family protein | Machinery gene |
| CNR27_RS05335 (CNR27_05335) | pilB | 1172385..1174109 (-) | 1725 | WP_096297261.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| CNR27_RS05340 (CNR27_05340) | - | 1174439..1174906 (-) | 468 | WP_096297262.1 | pilin | - |
| CNR27_RS05345 (CNR27_05345) | - | 1175106..1175825 (-) | 720 | WP_096297263.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 425 a.a. Molecular weight: 46511.84 Da Isoelectric Point: 10.3148
>NTDB_id=246731 CNR27_RS05330 WP_096297260.1 1170979..1172256(-) (pilC) [Luteimonas chenhongjianii strain 100111]
MSITRSAAKKSLPRKPPARPVREGVTLDTFVWEGSDKRGVKMKGEQQAKNANMLRAELRRQGIQPGMVKIKPKPLFGAAG
KKITAKEIAVFSRQLATMIKSGVPVVQALEIIGNGHKNPRMASMVNGLRQDIEGGSSINEALSKYPVQFDELFQNLVRAG
ETAGVLETVLDTIATYKENTESLKGKIKKALFYPATVIAVAILVSAVLLIFVVPQFEATFKSFNAELPAFTQLIVNMSRF
MTSWWWAILGGFIAAGTLFIYVFKRSKPLQHTVDRLMLRIPVIGQLLHNAAIARFARTLATTFKAGVPLVEALDIVAGAT
GSVVYEQAVHRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEEEVNNAVDALSSLIEPMIM
IIIGGVIGSMVIGMYLPIFKIAATI
MSITRSAAKKSLPRKPPARPVREGVTLDTFVWEGSDKRGVKMKGEQQAKNANMLRAELRRQGIQPGMVKIKPKPLFGAAG
KKITAKEIAVFSRQLATMIKSGVPVVQALEIIGNGHKNPRMASMVNGLRQDIEGGSSINEALSKYPVQFDELFQNLVRAG
ETAGVLETVLDTIATYKENTESLKGKIKKALFYPATVIAVAILVSAVLLIFVVPQFEATFKSFNAELPAFTQLIVNMSRF
MTSWWWAILGGFIAAGTLFIYVFKRSKPLQHTVDRLMLRIPVIGQLLHNAAIARFARTLATTFKAGVPLVEALDIVAGAT
GSVVYEQAVHRIRDDVSVGYQVNMAMKQVNLFPHMVVQMTAIGEEAGALDTMLFKVAEFYEEEVNNAVDALSSLIEPMIM
IIIGGVIGSMVIGMYLPIFKIAATI
Nucleotide
Download Length: 1278 bp
>NTDB_id=246731 CNR27_RS05330 WP_096297260.1 1170979..1172256(-) (pilC) [Luteimonas chenhongjianii strain 100111]
ATGTCGATCACACGCAGTGCCGCCAAGAAATCGCTCCCGCGCAAGCCGCCCGCGCGGCCTGTCCGCGAGGGCGTAACACT
GGACACGTTCGTCTGGGAGGGCTCGGACAAGCGCGGCGTCAAGATGAAAGGCGAGCAGCAGGCGAAGAACGCCAACATGC
TGCGCGCAGAGCTACGACGCCAGGGCATCCAGCCCGGCATGGTCAAGATCAAGCCCAAGCCCCTGTTCGGCGCGGCAGGC
AAGAAGATCACTGCGAAAGAGATCGCGGTGTTCAGCCGCCAGCTGGCGACGATGATCAAGTCGGGCGTGCCGGTGGTGCA
GGCGCTGGAGATCATCGGCAACGGCCACAAGAATCCACGCATGGCCTCGATGGTCAATGGCCTGCGCCAGGACATCGAGG
GTGGCTCTTCGATCAACGAAGCGCTGTCGAAGTACCCGGTGCAGTTCGACGAGCTGTTCCAGAATCTGGTGCGCGCGGGT
GAGACGGCGGGCGTGCTCGAGACCGTGCTCGACACGATTGCGACATACAAGGAAAACACCGAGAGCCTGAAGGGCAAGAT
CAAGAAGGCCCTGTTCTATCCGGCTACGGTCATCGCGGTGGCGATCCTGGTCAGCGCGGTGCTGTTGATCTTCGTGGTGC
CGCAGTTCGAGGCGACGTTCAAGAGCTTCAATGCGGAGCTGCCCGCGTTCACCCAGCTCATCGTCAACATGAGTCGCTTC
ATGACCTCGTGGTGGTGGGCGATCCTCGGCGGGTTCATTGCCGCGGGCACGCTCTTCATCTATGTGTTCAAGCGTTCCAA
GCCGCTGCAGCACACGGTCGACCGGCTGATGCTCAGGATCCCGGTGATCGGCCAGCTGCTGCATAACGCCGCTATTGCAC
GGTTCGCGCGCACCTTGGCGACCACGTTCAAGGCCGGCGTGCCGTTGGTGGAGGCACTGGATATCGTGGCGGGCGCGACC
GGCAGCGTGGTCTACGAGCAGGCGGTACATCGCATCCGCGACGACGTCTCCGTGGGCTACCAGGTCAACATGGCGATGAA
GCAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCAATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGT
TCAAGGTGGCCGAGTTCTACGAAGAAGAAGTCAACAACGCGGTCGACGCACTGAGCAGCCTGATCGAGCCGATGATCATG
ATCATCATCGGCGGCGTGATCGGCTCGATGGTGATCGGCATGTACCTGCCGATCTTCAAGATCGCCGCGACGATCTGA
ATGTCGATCACACGCAGTGCCGCCAAGAAATCGCTCCCGCGCAAGCCGCCCGCGCGGCCTGTCCGCGAGGGCGTAACACT
GGACACGTTCGTCTGGGAGGGCTCGGACAAGCGCGGCGTCAAGATGAAAGGCGAGCAGCAGGCGAAGAACGCCAACATGC
TGCGCGCAGAGCTACGACGCCAGGGCATCCAGCCCGGCATGGTCAAGATCAAGCCCAAGCCCCTGTTCGGCGCGGCAGGC
AAGAAGATCACTGCGAAAGAGATCGCGGTGTTCAGCCGCCAGCTGGCGACGATGATCAAGTCGGGCGTGCCGGTGGTGCA
GGCGCTGGAGATCATCGGCAACGGCCACAAGAATCCACGCATGGCCTCGATGGTCAATGGCCTGCGCCAGGACATCGAGG
GTGGCTCTTCGATCAACGAAGCGCTGTCGAAGTACCCGGTGCAGTTCGACGAGCTGTTCCAGAATCTGGTGCGCGCGGGT
GAGACGGCGGGCGTGCTCGAGACCGTGCTCGACACGATTGCGACATACAAGGAAAACACCGAGAGCCTGAAGGGCAAGAT
CAAGAAGGCCCTGTTCTATCCGGCTACGGTCATCGCGGTGGCGATCCTGGTCAGCGCGGTGCTGTTGATCTTCGTGGTGC
CGCAGTTCGAGGCGACGTTCAAGAGCTTCAATGCGGAGCTGCCCGCGTTCACCCAGCTCATCGTCAACATGAGTCGCTTC
ATGACCTCGTGGTGGTGGGCGATCCTCGGCGGGTTCATTGCCGCGGGCACGCTCTTCATCTATGTGTTCAAGCGTTCCAA
GCCGCTGCAGCACACGGTCGACCGGCTGATGCTCAGGATCCCGGTGATCGGCCAGCTGCTGCATAACGCCGCTATTGCAC
GGTTCGCGCGCACCTTGGCGACCACGTTCAAGGCCGGCGTGCCGTTGGTGGAGGCACTGGATATCGTGGCGGGCGCGACC
GGCAGCGTGGTCTACGAGCAGGCGGTACATCGCATCCGCGACGACGTCTCCGTGGGCTACCAGGTCAACATGGCGATGAA
GCAGGTCAACCTGTTCCCGCACATGGTGGTGCAGATGACCGCAATCGGCGAAGAGGCCGGCGCGCTCGACACCATGCTGT
TCAAGGTGGCCGAGTTCTACGAAGAAGAAGTCAACAACGCGGTCGACGCACTGAGCAGCCTGATCGAGCCGATGATCATG
ATCATCATCGGCGGCGTGATCGGCTCGATGGTGATCGGCATGTACCTGCCGATCTTCAAGATCGCCGCGACGATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
53.634 |
93.882 |
0.504 |
| pilC | Acinetobacter baylyi ADP1 |
52.393 |
93.412 |
0.489 |
| pilC | Pseudomonas stutzeri DSM 10701 |
52.02 |
93.176 |
0.485 |
| pilC | Acinetobacter baumannii D1279779 |
50.493 |
95.529 |
0.482 |
| pilG | Neisseria gonorrhoeae MS11 |
44.25 |
94.118 |
0.416 |
| pilG | Neisseria meningitidis 44/76-A |
43.97 |
93.647 |
0.412 |
| pilC | Thermus thermophilus HB27 |
38.519 |
95.294 |
0.367 |
| pilC | Vibrio cholerae strain A1552 |
38.155 |
94.353 |
0.36 |