Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   TBD_RS08850 Genome accession   NC_007404
Coordinates   1859379..1859648 (-) Length   89 a.a.
NCBI ID   WP_011312278.1    Uniprot ID   Q3SI14
Organism   Thiobacillus denitrificans ATCC 25259     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1854379..1864648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TBD_RS08825 (Tbd_1762) - 1855460..1855879 (-) 420 WP_041433105.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  TBD_RS08830 (Tbd_1763) - 1855913..1856917 (+) 1005 WP_011312275.1 hypothetical protein -
  TBD_RS08835 (Tbd_1764) rimO 1856924..1858255 (-) 1332 WP_011312276.1 30S ribosomal protein S12 methylthiotransferase RimO -
  TBD_RS08840 - 1858283..1858501 (+) 219 WP_041432618.1 hypothetical protein -
  TBD_RS08845 (Tbd_1765) - 1858439..1859224 (-) 786 WP_011312277.1 ZIP family metal transporter -
  TBD_RS08850 (Tbd_1766) comE 1859379..1859648 (-) 270 WP_011312278.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 9269.80 Da        Isoelectric Point: 10.5481

>NTDB_id=24672 TBD_RS08850 WP_011312278.1 1859379..1859648(-) (comE) [Thiobacillus denitrificans ATCC 25259]
MKLARNLLVLAGLLAFPAFAAVNINTATQSELEAIRGVGPAKAKAIISYRDANGAFKSVQELDKVKGFGKASVEKLQGEL
TVGAPGTKQ

Nucleotide


Download         Length: 270 bp        

>NTDB_id=24672 TBD_RS08850 WP_011312278.1 1859379..1859648(-) (comE) [Thiobacillus denitrificans ATCC 25259]
ATGAAATTGGCTCGAAATCTGTTGGTACTGGCCGGTCTTCTTGCGTTCCCGGCGTTCGCCGCGGTCAATATCAATACGGC
GACGCAATCCGAACTCGAAGCGATCCGCGGCGTCGGGCCGGCGAAAGCCAAGGCGATCATCAGCTACCGCGACGCTAACG
GGGCGTTCAAGAGCGTGCAGGAGCTGGACAAGGTCAAGGGCTTCGGCAAGGCGAGTGTCGAGAAATTGCAGGGCGAACTG
ACGGTCGGGGCGCCCGGCACCAAGCAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3SI14

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

56.18

100

0.562
  comE Neisseria gonorrhoeae MS11

56.18

100

0.562
  comE Neisseria gonorrhoeae MS11

56.18

100

0.562
  comE Neisseria gonorrhoeae MS11

56.18

100

0.562
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.351

86.517

0.427
  comEA Bacillus subtilis subsp. subtilis str. 168

53.968

70.787

0.382

Multiple sequence alignment