Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CNQ49_RS01690 | Genome accession | NZ_CP023383 |
| Coordinates | 349184..349720 (+) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain 1223 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 324731..370034 | 349184..349720 | within | 0 |
Gene organization within MGE regions
Location: 324731..370034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ49_RS01575 (CNQ49_01575) | - | 325888..327342 (+) | 1455 | Protein_271 | SopA family protein | - |
| CNQ49_RS01585 (CNQ49_01585) | ubiC | 327565..328062 (+) | 498 | WP_001326644.1 | chorismate lyase | - |
| CNQ49_RS01590 (CNQ49_01590) | ubiA | 328075..328947 (+) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| CNQ49_RS01595 (CNQ49_01595) | plsB | 329102..331525 (-) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| CNQ49_RS01600 (CNQ49_01600) | dgkA | 331696..332064 (+) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| CNQ49_RS01605 (CNQ49_01605) | lexA | 332174..332782 (+) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| CNQ49_RS01610 (CNQ49_01610) | dinF | 332855..334180 (+) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| CNQ49_RS01615 (CNQ49_01615) | yjbJ | 334296..334505 (+) | 210 | WP_001030593.1 | CsbD family protein | - |
| CNQ49_RS01620 (CNQ49_01620) | zur | 334547..335062 (-) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| CNQ49_RS26930 (CNQ49_01625) | yjbL | 335380..335634 (+) | 255 | WP_000912571.1 | protein YjbL | - |
| CNQ49_RS01630 (CNQ49_01630) | yjbM | 335625..336365 (+) | 741 | WP_000478761.1 | DUF2713 domain-containing protein | - |
| CNQ49_RS01635 (CNQ49_01635) | dusA | 336728..337765 (+) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| CNQ49_RS01640 (CNQ49_01640) | pspG | 337899..338141 (+) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| CNQ49_RS01645 (CNQ49_01645) | qorA | 338307..339290 (-) | 984 | WP_000235508.1 | quinone oxidoreductase | - |
| CNQ49_RS01650 (CNQ49_01650) | dnaB | 339373..340788 (+) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| CNQ49_RS01655 (CNQ49_01655) | alr | 340841..341920 (+) | 1080 | WP_001147328.1 | alanine racemase | - |
| CNQ49_RS01660 (CNQ49_01660) | tyrB | 342173..343366 (+) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| CNQ49_RS01665 (CNQ49_01665) | yjbS | 343868..344071 (-) | 204 | WP_001321562.1 | protein YjbS | - |
| CNQ49_RS01670 (CNQ49_01670) | aphA | 344473..345186 (+) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| CNQ49_RS01675 (CNQ49_01675) | yjbQ | 345297..345713 (+) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| CNQ49_RS01680 (CNQ49_01680) | yjbR | 345717..346073 (+) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| CNQ49_RS01685 (CNQ49_01685) | uvrA | 346108..348930 (-) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| CNQ49_RS01690 (CNQ49_01690) | ssb | 349184..349720 (+) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| CNQ49_RS01695 (CNQ49_01695) | - | 349879..351126 (+) | 1248 | WP_000414651.1 | site-specific integrase | - |
| CNQ49_RS01700 (CNQ49_01700) | - | 351113..352651 (+) | 1539 | WP_001333349.1 | site-specific integrase | - |
| CNQ49_RS01705 (CNQ49_01705) | - | 352668..354701 (+) | 2034 | WP_000807722.1 | hypothetical protein | - |
| CNQ49_RS26305 | - | 354694..355113 (+) | 420 | WP_001062122.1 | hypothetical protein | - |
| CNQ49_RS01715 (CNQ49_01715) | avs4 | 355189..359952 (+) | 4764 | WP_000240574.1 | AVAST type 4 anti-phage nuclease Avs4 | - |
| CNQ49_RS01725 (CNQ49_01725) | - | 360491..361312 (-) | 822 | WP_001272932.1 | abortive infection system antitoxin AbiGi family protein | - |
| CNQ49_RS01730 (CNQ49_01730) | yjcB | 361720..362001 (-) | 282 | WP_001295689.1 | YjcB family protein | - |
| CNQ49_RS01740 (CNQ49_01740) | pdeC | 362431..364017 (+) | 1587 | WP_000019548.1 | c-di-GMP phosphodiesterase PdeC | - |
| CNQ49_RS01745 (CNQ49_01745) | soxS | 364020..364343 (-) | 324 | WP_000019358.1 | superoxide response transcriptional regulator SoxS | - |
| CNQ49_RS01750 (CNQ49_01750) | soxR | 364429..364893 (+) | 465 | WP_000412428.1 | redox-sensitive transcriptional activator SoxR | - |
| CNQ49_RS01770 (CNQ49_01770) | ghxP | 365439..366788 (+) | 1350 | WP_000106882.1 | guanine/hypoxanthine transporter GhxP | - |
| CNQ49_RS01775 (CNQ49_01775) | yjcE | 366939..368588 (+) | 1650 | WP_000402207.1 | Na+/H+ antiporter | - |
| CNQ49_RS01780 (CNQ49_01780) | espX5 | 368742..370034 (-) | 1293 | WP_001270095.1 | T3SS effector pentapeptide repeat protein EspX5 | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=246428 CNQ49_RS01690 WP_000168305.1 349184..349720(+) (ssb) [Escherichia coli strain 1223]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=246428 CNQ49_RS01690 WP_000168305.1 349184..349720(+) (ssb) [Escherichia coli strain 1223]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |