Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CNQ51_RS22375 | Genome accession | NZ_CP023371 |
| Coordinates | 4328521..4329057 (-) | Length | 178 a.a. |
| NCBI ID | WP_000168305.1 | Uniprot ID | A0A9P2PPK2 |
| Organism | Escherichia coli strain 1283 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4310230..4352733 | 4328521..4329057 | within | 0 |
Gene organization within MGE regions
Location: 4310230..4352733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ51_RS22315 (CNQ51_22310) | - | 4310894..4314136 (-) | 3243 | WP_001251763.1 | type I restriction endonuclease subunit R | - |
| CNQ51_RS22320 (CNQ51_22315) | - | 4314149..4315537 (-) | 1389 | WP_001103168.1 | DNA-processing protein DprA | - |
| CNQ51_RS22325 (CNQ51_22320) | - | 4315534..4317666 (-) | 2133 | WP_001077932.1 | RecQ family ATP-dependent DNA helicase | - |
| CNQ51_RS22330 (CNQ51_22325) | - | 4317681..4318835 (-) | 1155 | WP_000118957.1 | restriction endonuclease subunit S | - |
| CNQ51_RS22335 (CNQ51_22330) | - | 4318832..4320973 (-) | 2142 | WP_034613856.1 | N-6 DNA methylase | - |
| CNQ51_RS22340 (CNQ51_22335) | - | 4320986..4321210 (-) | 225 | WP_001283160.1 | helix-turn-helix domain-containing protein | - |
| CNQ51_RS22345 (CNQ51_22340) | - | 4321308..4321859 (-) | 552 | WP_001136617.1 | hypothetical protein | - |
| CNQ51_RS22350 (CNQ51_22345) | - | 4321859..4323001 (-) | 1143 | WP_001172094.1 | helix-turn-helix domain-containing protein | - |
| CNQ51_RS22355 (CNQ51_22350) | - | 4323062..4323538 (-) | 477 | WP_000240784.1 | hypothetical protein | - |
| CNQ51_RS22360 (CNQ51_22355) | - | 4323531..4325540 (-) | 2010 | WP_001279565.1 | hypothetical protein | - |
| CNQ51_RS22365 (CNQ51_22360) | - | 4325533..4327131 (-) | 1599 | WP_001050717.1 | tyrosine-type recombinase/integrase | - |
| CNQ51_RS22370 (CNQ51_22365) | - | 4327128..4328303 (-) | 1176 | WP_044067894.1 | site-specific integrase | - |
| CNQ51_RS22375 (CNQ51_22370) | ssb | 4328521..4329057 (-) | 537 | WP_000168305.1 | single-stranded DNA-binding protein SSB1 | Machinery gene |
| CNQ51_RS22380 (CNQ51_22375) | uvrA | 4329311..4332133 (+) | 2823 | WP_000357740.1 | excinuclease ABC subunit UvrA | - |
| CNQ51_RS22385 (CNQ51_22380) | yjbR | 4332168..4332524 (-) | 357 | WP_000155657.1 | MmcQ/YjbR family DNA-binding protein | - |
| CNQ51_RS22390 (CNQ51_22385) | yjbQ | 4332528..4332944 (-) | 417 | WP_000270375.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| CNQ51_RS22395 (CNQ51_22390) | aphA | 4333055..4333768 (-) | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| CNQ51_RS22400 (CNQ51_22395) | yjbS | 4334170..4334373 (+) | 204 | WP_001321562.1 | protein YjbS | - |
| CNQ51_RS22405 (CNQ51_22400) | tyrB | 4334875..4336068 (-) | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| CNQ51_RS22410 (CNQ51_22405) | alr | 4336321..4337400 (-) | 1080 | WP_001147328.1 | alanine racemase | - |
| CNQ51_RS22415 (CNQ51_22410) | dnaB | 4337453..4338868 (-) | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| CNQ51_RS22420 (CNQ51_22415) | qorA | 4338951..4339934 (+) | 984 | WP_000235508.1 | quinone oxidoreductase | - |
| CNQ51_RS22425 (CNQ51_22420) | pspG | 4340100..4340342 (-) | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| CNQ51_RS22430 (CNQ51_22425) | dusA | 4340476..4341513 (-) | 1038 | WP_001298868.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| CNQ51_RS22435 (CNQ51_22430) | yjbM | 4341876..4342616 (-) | 741 | WP_000478761.1 | DUF2713 domain-containing protein | - |
| CNQ51_RS26720 (CNQ51_22435) | yjbL | 4342607..4342861 (-) | 255 | WP_000912571.1 | protein YjbL | - |
| CNQ51_RS22445 (CNQ51_22440) | zur | 4343179..4343694 (+) | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| CNQ51_RS22450 (CNQ51_22445) | yjbJ | 4343736..4343945 (-) | 210 | WP_001030593.1 | CsbD family protein | - |
| CNQ51_RS22455 (CNQ51_22450) | dinF | 4344061..4345386 (-) | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| CNQ51_RS22460 (CNQ51_22455) | lexA | 4345459..4346067 (-) | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| CNQ51_RS22465 (CNQ51_22460) | dgkA | 4346177..4346545 (-) | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| CNQ51_RS22470 (CNQ51_22465) | plsB | 4346716..4349139 (+) | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| CNQ51_RS22475 (CNQ51_22470) | ubiA | 4349294..4350166 (-) | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| CNQ51_RS22480 (CNQ51_22475) | ubiC | 4350179..4350676 (-) | 498 | WP_001326644.1 | chorismate lyase | - |
| CNQ51_RS22490 (CNQ51_22485) | - | 4350899..4352479 (-) | 1581 | Protein_4146 | SopA family protein | - |
Sequence
Protein
Download Length: 178 a.a. Molecular weight: 18975.00 Da Isoelectric Point: 5.2358
>NTDB_id=246399 CNQ51_RS22375 WP_000168305.1 4328521..4329057(-) (ssb) [Escherichia coli strain 1283]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF
Nucleotide
Download Length: 537 bp
>NTDB_id=246399 CNQ51_RS22375 WP_000168305.1 4328521..4329057(-) (ssb) [Escherichia coli strain 1283]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
74.444 |
100 |
0.753 |
| ssb | Glaesserella parasuis strain SC1401 |
57.923 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
48.066 |
100 |
0.489 |
| ssb | Neisseria gonorrhoeae MS11 |
48.066 |
100 |
0.489 |