Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | CLI97_RS02900 | Genome accession | NZ_CP023320 |
| Coordinates | 534786..535121 (+) | Length | 111 a.a. |
| NCBI ID | WP_003153104.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain SCGB | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 529786..540121
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLI97_RS02880 (CLI97_00582) | gcvT | 530396..531496 (-) | 1101 | WP_094247736.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CLI97_RS02885 (CLI97_00583) | - | 531920..533590 (+) | 1671 | WP_069013074.1 | DEAD/DEAH box helicase | - |
| CLI97_RS02890 (CLI97_00584) | - | 533608..534402 (+) | 795 | WP_014305407.1 | YqhG family protein | - |
| CLI97_RS02895 (CLI97_00585) | sinI | 534579..534752 (+) | 174 | WP_003153105.1 | anti-repressor SinI | Regulator |
| CLI97_RS02900 (CLI97_00586) | sinR | 534786..535121 (+) | 336 | WP_003153104.1 | transcriptional regulator SinR | Regulator |
| CLI97_RS02905 (CLI97_00587) | tasA | 535169..535954 (-) | 786 | WP_094247735.1 | biofilm matrix protein TasA | - |
| CLI97_RS02910 (CLI97_00588) | sipW | 536018..536602 (-) | 585 | WP_012117977.1 | signal peptidase I SipW | - |
| CLI97_RS02915 (CLI97_00589) | tapA | 536574..537245 (-) | 672 | WP_070082109.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CLI97_RS02920 (CLI97_00590) | - | 537504..537833 (+) | 330 | WP_003153097.1 | DUF3889 domain-containing protein | - |
| CLI97_RS02925 (CLI97_00591) | - | 537873..538052 (-) | 180 | WP_003153093.1 | YqzE family protein | - |
| CLI97_RS02930 (CLI97_00592) | comGG | 538109..538486 (-) | 378 | WP_094247734.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| CLI97_RS02935 (CLI97_00593) | comGF | 538487..538987 (-) | 501 | WP_227005764.1 | competence type IV pilus minor pilin ComGF | - |
| CLI97_RS02940 (CLI97_00594) | comGE | 538896..539210 (-) | 315 | WP_015388003.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CLI97_RS02945 (CLI97_00595) | comGD | 539194..539631 (-) | 438 | WP_025852922.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CLI97_RS02950 (CLI97_00596) | comGC | 539621..539887 (-) | 267 | WP_042635730.1 | competence type IV pilus major pilin ComGC | Machinery gene |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12972.64 Da Isoelectric Point: 7.2023
>NTDB_id=246009 CLI97_RS02900 WP_003153104.1 534786..535121(+) (sinR) [Bacillus velezensis strain SCGB]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE
Nucleotide
Download Length: 336 bp
>NTDB_id=246009 CLI97_RS02900 WP_003153104.1 534786..535121(+) (sinR) [Bacillus velezensis strain SCGB]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
99.099 |
100 |
0.991 |