Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AOC34_RS09275 Genome accession   NZ_CP023276
Coordinates   1827002..1827457 (-) Length   151 a.a.
NCBI ID   WP_108469788.1    Uniprot ID   -
Organism   Polynucleobacter difficilis strain AM-8B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1822002..1832457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC34_RS09260 ilvA 1823677..1825197 (+) 1521 WP_108469785.1 threonine ammonia-lyase, biosynthetic -
  AOC34_RS09265 - 1825207..1826130 (+) 924 WP_108469786.1 5'-nucleotidase -
  AOC34_RS09270 queF 1826155..1826997 (+) 843 WP_108469787.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  AOC34_RS09275 ssb 1827002..1827457 (-) 456 WP_108469788.1 single-stranded DNA-binding protein Machinery gene
  AOC34_RS09280 - 1827552..1828730 (-) 1179 WP_108469789.1 MFS transporter -
  AOC34_RS09285 uvrA 1828768..1831665 (+) 2898 WP_108470153.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16281.16 Da        Isoelectric Point: 5.9393

>NTDB_id=245701 AOC34_RS09275 WP_108469788.1 1827002..1827457(-) (ssb) [Polynucleobacter difficilis strain AM-8B5]
MASVNKVIIVGNIGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKETTEWHRVAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWADASGQEKYSTEIVADSMQMLGSKMSGGGEGGESYSRPKSSESSNAAPAPTAASLGAMDDDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=245701 AOC34_RS09275 WP_108469788.1 1827002..1827457(-) (ssb) [Polynucleobacter difficilis strain AM-8B5]
ATGGCTTCGGTAAATAAAGTCATCATCGTGGGTAACATTGGACGGGACCCAGAAACACGTTATATGCCTAGCGGCGACGC
AGTAACCAATATTTCAGTAGCTACATCGGATCGCTATAAAGACAAGCAAACCGGTGAGATGAAAGAAACCACAGAATGGC
ATCGCGTTGCGTTTTTTGGCAAGCTTGCTGAAATTGCAGGTCAGTATCTTAAGAAGGGATCGCAGGTATACGTCGAAGGC
CGTTTGCGTACACGCAAGTGGGCTGATGCCAGTGGTCAAGAAAAATACTCCACCGAGATTGTGGCGGACTCGATGCAGAT
GTTGGGCTCGAAGATGTCGGGTGGCGGTGAGGGGGGTGAAAGCTATTCGCGCCCTAAGTCATCTGAGTCATCAAACGCAG
CACCGGCGCCTACAGCGGCATCCTTGGGCGCAATGGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.282

100

0.589
  ssb Glaesserella parasuis strain SC1401

56.757

98.013

0.556
  ssb Neisseria meningitidis MC58

45.402

100

0.523
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.523

Multiple sequence alignment