Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CLM75_RS24905 Genome accession   NZ_CP023272
Coordinates   5424724..5425239 (-) Length   171 a.a.
NCBI ID   WP_003232445.1    Uniprot ID   A0A0W0N9K8
Organism   Pseudomonas lurida strain MYb11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5419724..5430239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM75_RS24890 (CLM75_24720) - 5419854..5421860 (-) 2007 WP_105162950.1 integrase -
  CLM75_RS24895 (CLM75_24725) - 5421853..5423367 (-) 1515 WP_105162951.1 site-specific integrase -
  CLM75_RS24900 (CLM75_24730) - 5423364..5424581 (-) 1218 WP_105162952.1 tyrosine-type recombinase/integrase -
  CLM75_RS24905 (CLM75_24735) ssb 5424724..5425239 (-) 516 WP_003232445.1 single-stranded DNA-binding protein Machinery gene
  CLM75_RS24910 (CLM75_24740) - 5425249..5426643 (-) 1395 WP_034109553.1 MFS transporter -
  CLM75_RS24915 (CLM75_24745) uvrA 5426822..5429656 (+) 2835 WP_069078326.1 excinuclease ABC subunit UvrA -
  CLM75_RS24920 (CLM75_24750) bfr 5429722..5430186 (-) 465 WP_034109557.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19015.19 Da        Isoelectric Point: 5.9455

>NTDB_id=245677 CLM75_RS24905 WP_003232445.1 5424724..5425239(-) (ssb) [Pseudomonas lurida strain MYb11]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=245677 CLM75_RS24905 WP_003232445.1 5424724..5425239(-) (ssb) [Pseudomonas lurida strain MYb11]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACGTGCGGCCAGGATCCCGAGGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAACAGTGGACCGACAAGCAGACCGGCCAGAAGGTCGAGAAAACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCGCAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGTCCACAGC
AGTCCCGCCCACAGCCAAGCCAGCAGCCACAGCGTGAGTCGCGCCCAGCGCCACAACAGGCCGCACCGCAGCCGGCTCCG
GATTTCGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W0N9K8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.614
  ssb Glaesserella parasuis strain SC1401

45.833

100

0.515
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.497
  ssb Neisseria meningitidis MC58

46.023

100

0.474

Multiple sequence alignment