Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CLM75_RS16480 Genome accession   NZ_CP023272
Coordinates   3638103..3640328 (-) Length   741 a.a.
NCBI ID   WP_105162489.1    Uniprot ID   -
Organism   Pseudomonas lurida strain MYb11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3633103..3645328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM75_RS16445 (CLM75_16355) murB 3633485..3634504 (-) 1020 WP_105162487.1 UDP-N-acetylmuramate dehydrogenase -
  CLM75_RS16450 (CLM75_16360) - 3634501..3634965 (-) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  CLM75_RS16455 (CLM75_16365) kdsB 3634965..3635729 (-) 765 WP_105162488.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CLM75_RS16460 (CLM75_16370) - 3635726..3635911 (-) 186 WP_003174668.1 Trm112 family protein -
  CLM75_RS16465 (CLM75_16375) lpxK 3635936..3636946 (-) 1011 WP_034106778.1 tetraacyldisaccharide 4'-kinase -
  CLM75_RS16470 (CLM75_16380) - 3636946..3637374 (-) 429 WP_034106779.1 ExbD/TolR family protein -
  CLM75_RS16475 (CLM75_16385) exbB 3637371..3638006 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CLM75_RS16480 (CLM75_16390) comA 3638103..3640328 (-) 2226 WP_105162489.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CLM75_RS16485 (CLM75_16395) - 3640464..3640979 (+) 516 WP_034106781.1 DUF2062 domain-containing protein -
  CLM75_RS16490 (CLM75_16400) - 3640976..3642346 (-) 1371 WP_105162490.1 sensor histidine kinase -
  CLM75_RS16495 (CLM75_16405) - 3642333..3643061 (-) 729 WP_034106783.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80345.41 Da        Isoelectric Point: 10.8316

>NTDB_id=245670 CLM75_RS16480 WP_105162489.1 3638103..3640328(-) (comA) [Pseudomonas lurida strain MYb11]
MRTGMVALALGLLSLRFLPALPATGWLIALLVLALMLLPFRTYPLAFFLLGLSWACVSAQWALDDRLRPALDGQTRWVEG
RVTGLPQQTGEGVRFVLTDNRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKQPAGLLNFHGFDQEAWLLAQRIGATG
SVKDGERLAPAHNAWRDSVRQRLMAVDAQGREAGLTALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFSAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLPLPFVGEGLLWLAGGALEGLFEGLAWLAAQVPAWIPAEVPMGYWLVSLFGAVLLLLPKGVPFRLLGWPMLMLAV
FAPRELVPHGQVDVVQLDVGQGQALILRTRHHALLYDAGPRSGTFDLGARVVLPSLRKLGVGALDLMLLSHADADHAGGA
TAIAKGLPIKRVVGGETEGLPALLGTQPCISGERWTWDGVTFELWQWPGAITGNPKSCVLQVQANGERLLLTGDIDRAAE
QAMLGSPLAVPTHWLQAPHHGSRSSSSWAFLERLAPQSVLISRGRGNAFGHPHPQVMARYQRLGSQVYDSAEHGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=245670 CLM75_RS16480 WP_105162489.1 3638103..3640328(-) (comA) [Pseudomonas lurida strain MYb11]
ATGAGGACAGGGATGGTCGCGCTGGCGCTGGGGTTGCTGAGCCTGCGCTTTTTACCGGCATTGCCGGCTACCGGCTGGCT
GATCGCCTTATTGGTGCTGGCATTGATGCTGTTGCCGTTTCGCACTTACCCGTTGGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCCTGCGTCAGCGCGCAGTGGGCGTTGGATGATCGCCTGAGGCCGGCACTGGATGGCCAGACACGTTGGGTGGAAGGG
CGGGTCACCGGGCTGCCGCAACAGACGGGTGAGGGCGTGCGTTTTGTCCTGACCGACAACCGGTCGCGCAATGCCCGGTT
GCCCAAACGCATTCGGGTGTCCTGGCGAGGCGGGCCACCGGTCCGCAGTGGTGAGCGCTGGCGCCTGGCAATCACCCTCA
AGCAACCGGCCGGGCTGTTGAATTTTCACGGATTTGACCAGGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACCGGC
TCGGTGAAGGACGGCGAGCGCCTGGCACCGGCCCACAACGCCTGGCGCGACAGTGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAGGGCCGGGAAGCCGGCCTGACTGCCCTGGTGCTGGGGGATGGCTCCGGGTTGGCCGCTGCCGATTGGCAGGTGT
TGCAGGACACGGGCACCGTGCATCTGCTGGTCATCTCCGGCCAACACATCGGTTTGTTGGCGGGCTTGATCTATGGGTTG
ATCGCCGGGCTGGCGCGCTACGGCTGCTGGCCCCGAACCTGGCCGTGGCTGCCATGGGCGTGTGGCCTGGCATTCAGCGC
CGCGCTGGGCTACGGCTTGCTGGCAGGGTTTGGCGTGCCGGTGCAGCGTGCCTGCGTGATGGTCGGCCTGGTGTTGTTGT
GGCGGTTGCGCTTCCGGCATCTGGGGCTCTGGTGGCCGCTGCTGCTGGCACTCAATGGGGTGCTGGTCCTGGAACCCTTG
GCCAGCCTGCAGCCGGGCTTCTGGCTGTCGTTTGCGGCGGTAGCGGTATTGATCCTGGCGTTCGGTGGACGACTGGGGCC
ATGGAGCCTGTGGCAGGCGTGGACCCGGCCGCAGTGGTTGATTGCCATTGGGTTGTTTCCGGTGTTGCTGGTGCTGGGGC
TGCCTATCAGCCTGAGCGCGCCGTTCGCTAACCTTGTGGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCACTGGCGTTG
CTGGGGACGGCGTTGCTGCCGTTGCCGTTTGTGGGGGAAGGATTGCTCTGGCTGGCGGGCGGTGCGCTGGAGGGTTTGTT
CGAGGGCTTGGCGTGGCTGGCCGCGCAGGTGCCGGCCTGGATCCCGGCCGAAGTGCCGATGGGCTATTGGTTGGTGAGCC
TGTTCGGTGCCGTGTTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGCTTGCTGGGCTGGCCGATGCTGATGCTGGCCGTG
TTTGCGCCACGCGAACTGGTTCCCCATGGCCAGGTAGACGTGGTGCAATTGGATGTAGGGCAGGGGCAGGCGTTGATCTT
GCGTACCCGTCACCATGCCTTGCTGTATGACGCCGGCCCGCGCTCCGGAACCTTTGACCTGGGCGCGCGCGTGGTGCTGC
CGTCGCTGCGAAAACTTGGGGTAGGGGCCTTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGCGCG
ACGGCGATAGCCAAGGGCCTGCCGATCAAGCGCGTGGTGGGCGGGGAAACCGAGGGTCTGCCGGCGCTGCTCGGCACCCA
GCCGTGTATCAGTGGCGAGCGCTGGACCTGGGACGGTGTCACGTTCGAACTCTGGCAATGGCCTGGTGCTATCACCGGTA
ACCCGAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGCGAGCGCCTGTTGCTGACCGGTGACATTGACCGCGCCGCCGAA
CAGGCCATGCTCGGTTCACCGCTGGCGGTGCCCACTCATTGGTTGCAGGCGCCACACCATGGCAGTCGCAGTTCTTCATC
CTGGGCGTTCCTGGAGCGCCTTGCCCCGCAGTCCGTGCTTATTTCACGGGGGCGGGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTGATGGCGCGTTACCAGCGGTTGGGCAGCCAGGTGTATGACAGTGCCGAGCACGGGGCCGTGCGCCTGCAACTC
GGGGCTTTCGCGCCGCCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGCGAGCGGTTACCGTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

97.166

0.59
  comA Ralstonia pseudosolanacearum GMI1000

34.712

100

0.374

Multiple sequence alignment