Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   CLM75_RS16475 Genome accession   NZ_CP023272
Coordinates   3637371..3638006 (-) Length   211 a.a.
NCBI ID   WP_012724911.1    Uniprot ID   A0A855QI08
Organism   Pseudomonas lurida strain MYb11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3632371..3643006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM75_RS16440 (CLM75_16350) - 3632732..3633403 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  CLM75_RS16445 (CLM75_16355) murB 3633485..3634504 (-) 1020 WP_105162487.1 UDP-N-acetylmuramate dehydrogenase -
  CLM75_RS16450 (CLM75_16360) - 3634501..3634965 (-) 465 WP_034106774.1 low molecular weight protein-tyrosine-phosphatase -
  CLM75_RS16455 (CLM75_16365) kdsB 3634965..3635729 (-) 765 WP_105162488.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CLM75_RS16460 (CLM75_16370) - 3635726..3635911 (-) 186 WP_003174668.1 Trm112 family protein -
  CLM75_RS16465 (CLM75_16375) lpxK 3635936..3636946 (-) 1011 WP_034106778.1 tetraacyldisaccharide 4'-kinase -
  CLM75_RS16470 (CLM75_16380) - 3636946..3637374 (-) 429 WP_034106779.1 ExbD/TolR family protein -
  CLM75_RS16475 (CLM75_16385) exbB 3637371..3638006 (-) 636 WP_012724911.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  CLM75_RS16480 (CLM75_16390) comA 3638103..3640328 (-) 2226 WP_105162489.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CLM75_RS16485 (CLM75_16395) - 3640464..3640979 (+) 516 WP_034106781.1 DUF2062 domain-containing protein -
  CLM75_RS16490 (CLM75_16400) - 3640976..3642346 (-) 1371 WP_105162490.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.02 Da        Isoelectric Point: 7.3613

>NTDB_id=245669 CLM75_RS16475 WP_012724911.1 3637371..3638006(-) (exbB) [Pseudomonas lurida strain MYb11]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKDKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=245669 CLM75_RS16475 WP_012724911.1 3637371..3638006(-) (exbB) [Pseudomonas lurida strain MYb11]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGCTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGGCAGGTCTGGAGCTGGATCAAGAACA
AGCAACTGGACAAGGACAAACTCAAGGAGCTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCTGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAAGCCGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCATTGCTCGGCTTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGACCACCAACGCGGCGGTGTTGGCCGGGGGGATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAGCGTCGCATTGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTACAGGGCGACCGTGATGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A855QI08

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment