Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CLM72_RS25145 Genome accession   NZ_CP023269
Coordinates   5487375..5487890 (-) Length   171 a.a.
NCBI ID   WP_105228726.1    Uniprot ID   -
Organism   Pseudomonas sp. MYb193     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5482375..5492890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLM72_RS25120 (CLM72_24950) - 5482747..5483502 (-) 756 WP_105228721.1 S9 family peptidase -
  CLM72_RS25125 (CLM72_24955) - 5483492..5484601 (-) 1110 WP_105228722.1 DUF3182 family protein -
  CLM72_RS25130 (CLM72_24960) - 5484771..5485742 (-) 972 WP_105228723.1 GlxA family transcriptional regulator -
  CLM72_RS25135 (CLM72_24965) - 5485839..5486402 (+) 564 WP_105228724.1 cysteine hydrolase family protein -
  CLM72_RS25140 (CLM72_24970) tam 5486424..5487185 (-) 762 WP_105228725.1 trans-aconitate 2-methyltransferase -
  CLM72_RS25145 (CLM72_24975) ssb 5487375..5487890 (-) 516 WP_105228726.1 single-stranded DNA-binding protein Machinery gene
  CLM72_RS25150 (CLM72_24980) - 5487900..5489294 (-) 1395 WP_014720149.1 MFS transporter -
  CLM72_RS25155 (CLM72_24985) uvrA 5489473..5492307 (+) 2835 WP_056785288.1 excinuclease ABC subunit UvrA -
  CLM72_RS25160 (CLM72_24990) bfr 5492375..5492839 (-) 465 WP_003176400.1 bacterioferritin -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19130.28 Da        Isoelectric Point: 5.9589

>NTDB_id=245622 CLM72_RS25145 WP_105228726.1 5487375..5487890(-) (ssb) [Pseudomonas sp. MYb193]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTNERKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDQQGQGGMSNSAPRPQQSRPQPSQQPQRESRPAPQQAAPQPAP
DFDSFDDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=245622 CLM72_RS25145 WP_105228726.1 5487375..5487890(-) (ssb) [Pseudomonas sp. MYb193]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACTTGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
TGCTGTGACCAACCTGAGTCTGGCGACCAGCGAGCAATGGACCGATAAGCAGACCAACGAGCGCAAAGAGAAAACCGAGT
GGCACCGCGTGTCGATGTTCGGCAAGGTCGCAGAGATCGCCGGTGAATACCTGCGCAAAGGTTCGCAGGTGTACATCGAA
GGCAAACTGCAAACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACCGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGCGACCAACAGGGCCAGGGCGGCATGTCCAACTCGGCACCGCGCCCACAGC
AGTCGCGTCCGCAGCCAAGCCAACAGCCACAGCGTGAGTCGCGCCCAGCACCACAACAGGCTGCCCCGCAACCGGCTCCG
GATTTCGACAGCTTTGATGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

59.218

100

0.62
  ssb Glaesserella parasuis strain SC1401

46.354

100

0.52
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.485
  ssb Neisseria meningitidis MC58

44.886

100

0.462

Multiple sequence alignment