Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CLD04_RS12995 | Genome accession | NZ_CP023257 |
| Coordinates | 2428880..2429176 (-) | Length | 98 a.a. |
| NCBI ID | WP_041334973.1 | Uniprot ID | A0AAP2M473 |
| Organism | Bacillus subtilis strain TLO3 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2423880..2434176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLD04_RS12950 (CLD04_12950) | tasA | 2424294..2425079 (-) | 786 | WP_017696201.1 | biofilm matrix protein TasA | - |
| CLD04_RS12955 (CLD04_12955) | sipW | 2425144..2425716 (-) | 573 | WP_072557060.1 | signal peptidase I SipW | - |
| CLD04_RS12960 (CLD04_12960) | tapA | 2425700..2426455 (-) | 756 | WP_017696199.1 | amyloid fiber anchoring/assembly protein TapA | - |
| CLD04_RS12965 (CLD04_12965) | yqzG | 2426726..2427052 (+) | 327 | WP_026113671.1 | YqzG/YhdC family protein | - |
| CLD04_RS12970 (CLD04_12970) | spoIITA | 2427094..2427273 (-) | 180 | WP_014480252.1 | YqzE family protein | - |
| CLD04_RS12975 (CLD04_12975) | comGG | 2427344..2427718 (-) | 375 | WP_032726157.1 | ComG operon protein ComGG | Machinery gene |
| CLD04_RS12980 (CLD04_12980) | comGF | 2427719..2428102 (-) | 384 | WP_041334965.1 | ComG operon protein ComGF | Machinery gene |
| CLD04_RS12985 (CLD04_12985) | comGE | 2428128..2428475 (-) | 348 | WP_041334967.1 | ComG operon protein 5 | Machinery gene |
| CLD04_RS12990 (CLD04_12990) | comGD | 2428459..2428890 (-) | 432 | WP_041334970.1 | comG operon protein ComGD | Machinery gene |
| CLD04_RS12995 (CLD04_12995) | comGC | 2428880..2429176 (-) | 297 | WP_041334973.1 | comG operon protein ComGC | Machinery gene |
| CLD04_RS13000 (CLD04_13000) | comGB | 2429190..2430227 (-) | 1038 | WP_041334977.1 | comG operon protein ComGB | Machinery gene |
| CLD04_RS13005 (CLD04_13005) | comGA | 2430214..2431284 (-) | 1071 | WP_017696192.1 | competence protein ComGA | Machinery gene |
| CLD04_RS13015 (CLD04_13015) | corA | 2431694..2432647 (-) | 954 | WP_017696189.1 | magnesium transporter CorA | - |
| CLD04_RS13020 (CLD04_13020) | yqhB | 2432789..2434117 (+) | 1329 | WP_017696188.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10844.72 Da Isoelectric Point: 6.4730
>NTDB_id=245554 CLD04_RS12995 WP_041334973.1 2428880..2429176(-) (comGC) [Bacillus subtilis strain TLO3]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPTLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPTLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH
Nucleotide
Download Length: 297 bp
>NTDB_id=245554 CLD04_RS12995 WP_041334973.1 2428880..2429176(-) (comGC) [Bacillus subtilis strain TLO3]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAGGGGCAAACTCCGACCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAGGGGCAAACTCCGACCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
97.959 |
100 |
0.98 |
| comYC | Streptococcus suis isolate S10 |
50.667 |
76.531 |
0.388 |
| comGC | Staphylococcus aureus MW2 |
40.217 |
93.878 |
0.378 |
| comGC | Staphylococcus aureus N315 |
40.217 |
93.878 |
0.378 |