Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CLH39_RS01460 Genome accession   NZ_CP023256
Coordinates   334086..334604 (+) Length   172 a.a.
NCBI ID   WP_063692165.1    Uniprot ID   -
Organism   Alcaligenes faecalis strain c16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 329086..339604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLH39_RS01450 (CLH39_01460) uvrA 329540..332503 (-) 2964 WP_035269621.1 excinuclease ABC subunit UvrA -
  CLH39_RS01455 (CLH39_01465) - 332615..333826 (+) 1212 WP_022983677.1 MFS transporter -
  CLH39_RS01460 (CLH39_01470) ssb 334086..334604 (+) 519 WP_063692165.1 single-stranded DNA-binding protein Machinery gene
  CLH39_RS01465 (CLH39_01475) - 334790..337054 (-) 2265 WP_238441715.1 TonB-dependent receptor -
  CLH39_RS01470 (CLH39_01480) - 337340..338281 (-) 942 WP_035269623.1 FecR family protein -
  CLH39_RS01475 (CLH39_01485) - 338302..338802 (-) 501 WP_035269625.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18873.89 Da        Isoelectric Point: 5.3412

>NTDB_id=245497 CLH39_RS01460 WP_063692165.1 334086..334604(+) (ssb) [Alcaligenes faecalis strain c16]
MASVNKVILVGNLGRDPEVRYSAEGSAICNISIATTSQWKDRTSGERREETEWHRVVFYNRLAEIAGEYLRKGRPVYVEG
RLRTRKWTGQDGQERFTTEIIAEQMQMLGGRDGGDMGGGSMGGGEYGGGGGGAPAPQRAQRPAPQQQQQQQAPRNNAPMS
DNLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=245497 CLH39_RS01460 WP_063692165.1 334086..334604(+) (ssb) [Alcaligenes faecalis strain c16]
ATGGCATCGGTAAATAAAGTCATTCTGGTCGGCAATCTTGGCCGCGACCCAGAAGTACGCTACAGCGCAGAAGGCTCGGC
CATCTGCAATATTTCCATTGCCACGACTTCGCAGTGGAAAGACCGTACCTCTGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGTGTGGTGTTCTACAACCGTCTGGCTGAAATTGCAGGTGAGTACCTGCGTAAAGGTCGTCCCGTCTACGTAGAAGGT
CGTCTGCGCACCCGTAAATGGACAGGTCAGGACGGTCAGGAGCGTTTCACGACCGAAATCATTGCCGAGCAAATGCAAAT
GCTGGGTGGCCGTGACGGTGGTGATATGGGCGGTGGCAGCATGGGTGGTGGCGAATACGGTGGCGGCGGTGGTGGTGCAC
CAGCTCCGCAACGTGCTCAGCGTCCAGCGCCTCAGCAACAGCAGCAACAACAGGCCCCACGTAATAACGCTCCTATGTCG
GACAATCTGGCCGATATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.053

100

0.564
  ssb Glaesserella parasuis strain SC1401

47.668

100

0.535
  ssb Neisseria meningitidis MC58

47.802

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.506

Multiple sequence alignment