Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CLI14_RS12645 Genome accession   NZ_CP023208
Coordinates   2740767..2741300 (-) Length   177 a.a.
NCBI ID   WP_013857892.1    Uniprot ID   A0AAW8GW50
Organism   Vibrio anguillarum strain ATCC-68554     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2735767..2746300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLI14_RS12625 (CLI14_12625) - 2736237..2736563 (-) 327 WP_013857888.1 MSHA biogenesis protein MshK -
  CLI14_RS12630 (CLI14_12630) gspM 2736553..2737197 (-) 645 WP_013857889.1 type II secretion system protein GspM -
  CLI14_RS12635 (CLI14_12635) - 2737194..2738636 (-) 1443 WP_013857890.1 hypothetical protein -
  CLI14_RS12640 (CLI14_12640) csrD 2738649..2740637 (-) 1989 WP_029189909.1 RNase E specificity factor CsrD -
  CLI14_RS12645 (CLI14_12645) ssb 2740767..2741300 (-) 534 WP_013857892.1 single-stranded DNA-binding protein Machinery gene
  CLI14_RS12650 (CLI14_12650) qstR 2741586..2742233 (+) 648 WP_026027842.1 LuxR C-terminal-related transcriptional regulator Regulator
  CLI14_RS12655 (CLI14_12655) galU 2742351..2743220 (+) 870 WP_013857894.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CLI14_RS12660 (CLI14_12660) uvrA 2743389..2746211 (+) 2823 WP_026029161.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19459.61 Da        Isoelectric Point: 5.2257

>NTDB_id=245332 CLI14_RS12645 WP_013857892.1 2740767..2741300(-) (ssb) [Vibrio anguillarum strain ATCC-68554]
MASRGVNKVILVGNLGNDPEIRYMPGGAAVANITIATSDSWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMPQQQQQGGGWGQPQQPAMQKQPQQQQSAPQQA
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=245332 CLI14_RS12645 WP_013857892.1 2740767..2741300(-) (ssb) [Vibrio anguillarum strain ATCC-68554]
ATGGCAAGCCGTGGAGTAAATAAAGTTATTTTAGTGGGTAACCTAGGTAACGACCCAGAAATTCGTTATATGCCTGGTGG
CGCTGCTGTGGCAAATATCACCATTGCAACGTCAGATTCATGGCGTGATAAAGCAACTGGCGAGCAACGCGAAAAAACCG
AATGGCACCGTGTTGCGCTGTTTGGCAAATTAGCCGAAGTGGCTGGTGAATACTTACGTAAAGGTTCACAAGTGTACATT
GAAGGTCAGCTACAAACTCGTAAGTGGCAAGATCAAAGTGGACAAGATCGTTATACCACCGAAGTTGTCGTACAAGGGTT
TAATGGTGTGATGCAAATGTTGGGTGGCCGTGCTCAAGGTGGTGCTCCAGCGCAAGGTGGAATGCCACAACAACAGCAAC
AAGGTGGCGGATGGGGGCAACCTCAGCAGCCTGCGATGCAAAAGCAACCACAGCAACAGCAGTCAGCTCCTCAACAGGCT
CAACCTCAGTATAATGAACCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

84.916

100

0.859
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.593
  ssb Neisseria meningitidis MC58

43.889

100

0.446
  ssb Neisseria gonorrhoeae MS11

43.889

100

0.446

Multiple sequence alignment