Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJF59_RS00670 Genome accession   NZ_CP023189
Coordinates   127855..128421 (-) Length   188 a.a.
NCBI ID   WP_006115597.1    Uniprot ID   F1YRN3
Organism   Acetobacter pomorum strain SH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122855..133421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJF59_RS00645 (CJF59_00655) - 124094..124432 (+) 339 WP_089179789.1 hypothetical protein -
  CJF59_RS00650 (CJF59_00660) - 124557..125648 (+) 1092 WP_193561051.1 glycosyltransferase family 4 protein -
  CJF59_RS00660 (CJF59_00670) dksA 125890..126303 (-) 414 WP_003626519.1 RNA polymerase-binding protein DksA -
  CJF59_RS00665 (CJF59_00675) - 126519..127793 (-) 1275 WP_089179787.1 O-antigen ligase -
  CJF59_RS00670 (CJF59_00680) ssb 127855..128421 (-) 567 WP_006115597.1 single-stranded DNA-binding protein Machinery gene
  CJF59_RS00675 (CJF59_00685) rsmD 128499..129083 (-) 585 WP_089179786.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  CJF59_RS00680 (CJF59_00690) - 129083..129859 (-) 777 WP_006115595.1 pseudouridine synthase -
  CJF59_RS00685 (CJF59_00695) - 129856..130587 (-) 732 WP_089179785.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  CJF59_RS15455 - 130710..130862 (-) 153 WP_003626506.1 hypothetical protein -
  CJF59_RS00690 (CJF59_00700) - 131079..131534 (+) 456 WP_063354751.1 nucleoside deaminase -
  CJF59_RS00695 (CJF59_00705) - 131711..133279 (+) 1569 WP_089179784.1 Do family serine endopeptidase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20025.69 Da        Isoelectric Point: 5.3755

>NTDB_id=245222 CJF59_RS00670 WP_006115597.1 127855..128421(-) (ssb) [Acetobacter pomorum strain SH]
MAGSVNKVILVGNLGKDPEVRSSQSGAKIVSFSLATSDTWNDRASGERRERTEWHRVVIFNERLADVAERFLRKGRKVYL
EGSLQTRKWTDQGGQERYTTEVIIDRFRGELVLLDSRNSGEGESEGGGGFSGGSGSSYGGYNSGGSGSAYGAPSSAPRQP
PAQRSGGNNSGGWDASGGNGDLDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=245222 CJF59_RS00670 WP_006115597.1 127855..128421(-) (ssb) [Acetobacter pomorum strain SH]
ATGGCTGGCAGCGTTAACAAGGTTATTCTGGTCGGCAATCTGGGCAAAGACCCCGAAGTGCGCTCCAGCCAGAGCGGTGC
AAAGATTGTTTCCTTCTCTCTGGCCACCAGCGACACATGGAATGACCGCGCATCTGGTGAACGGCGTGAACGCACAGAAT
GGCATCGCGTAGTCATTTTTAATGAACGGCTGGCAGATGTGGCCGAACGTTTCCTGCGCAAAGGCCGCAAGGTTTATCTG
GAAGGCTCCCTGCAAACCAGAAAATGGACAGATCAGGGTGGTCAGGAACGCTATACAACGGAAGTGATTATTGACCGCTT
CCGTGGTGAGCTGGTGCTGCTGGATAGCCGCAATAGTGGCGAAGGTGAAAGCGAAGGCGGCGGTGGCTTTAGCGGTGGAA
GCGGCAGCAGCTACGGTGGCTACAACAGTGGGGGCAGCGGTAGTGCTTATGGCGCTCCATCATCCGCACCACGCCAGCCG
CCAGCGCAGCGCAGCGGCGGCAATAACTCCGGCGGCTGGGATGCATCTGGCGGCAACGGGGATCTTGATGACGAAATCCC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F1YRN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.231

100

0.489
  ssb Vibrio cholerae strain A1552

43.243

98.404

0.426
  ssb Neisseria gonorrhoeae MS11

40.107

99.468

0.399
  ssb Neisseria meningitidis MC58

40

98.404

0.394

Multiple sequence alignment