Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   CIW72_RS05880 Genome accession   NZ_CP023159
Coordinates   1266543..1267997 (-) Length   484 a.a.
NCBI ID   WP_033481907.1    Uniprot ID   -
Organism   Xanthomonas citri pv. malvacearum strain MS14003     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261543..1272997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CIW72_RS05855 (CIW72_05855) - 1262318..1263358 (+) 1041 WP_050554799.1 glycosyltransferase -
  CIW72_RS05860 (CIW72_05860) - 1263351..1264007 (+) 657 WP_157733690.1 methionine biosynthesis protein MetW -
  CIW72_RS05865 (CIW72_05865) pilB 1264105..1265841 (+) 1737 WP_005915821.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CIW72_RS05870 (CIW72_05870) pilB 1265938..1266057 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  CIW72_RS05875 (CIW72_05875) - 1266213..1266356 (+) 144 WP_005915817.1 hypothetical protein -
  CIW72_RS05880 (CIW72_05880) pilR 1266543..1267997 (-) 1455 WP_033481907.1 sigma-54 dependent transcriptional regulator Regulator
  CIW72_RS05885 (CIW72_05885) - 1268262..1269875 (-) 1614 WP_005915814.1 HAMP domain-containing sensor histidine kinase -
  CIW72_RS05890 (CIW72_05890) sucC 1270107..1271276 (+) 1170 WP_005915812.1 ADP-forming succinate--CoA ligase subunit beta -
  CIW72_RS05895 (CIW72_05895) sucD 1271301..1272176 (+) 876 WP_005915809.1 succinate--CoA ligase subunit alpha -
  CIW72_RS05905 (CIW72_05905) - 1272592..1272963 (+) 372 WP_005915804.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52540.42 Da        Isoelectric Point: 7.0128

>NTDB_id=245020 CIW72_RS05880 WP_033481907.1 1266543..1267997(-) (pilR) [Xanthomonas citri pv. malvacearum strain MS14003]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPLPPPEQASR
LLGDSSAMEILRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=245020 CIW72_RS05880 WP_033481907.1 1266543..1267997(-) (pilR) [Xanthomonas citri pv. malvacearum strain MS14003]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACTGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATTAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.043

95.041

0.599
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment