Detailed information NTG0244921

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CK627_RS01595
• Genome accession: NZ_CP023141
• Coordinates: 289654..290526 (+)
• Length: 290 a.a.
• NCBI ID: WP_095591547.1
• Uniprot ID: -
• Organism: Aeromonas dhakensis strain KN-Mc-6U21
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 284654..295526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CK627_RS01570 (CK627_01570)	nadC	284954..285811 (+)	858	WP_095591546.1	carboxylating nicotinate-nucleotide diphosphorylase	-
CK627_RS01580 (CK627_01580)	tapA	286133..286561 (+)	429	WP_041204773.1	type IVa pilus major pilin TapA	-
CK627_RS01585 (CK627_01585)	pilB	286568..288274 (+)	1707	WP_024943110.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
CK627_RS01590 (CK627_01590)	pilC	288390..289631 (+)	1242	WP_005305649.1	type II secretion system F family protein	Machinery gene
CK627_RS01595 (CK627_01595)	pilD	289654..290526 (+)	873	WP_095591547.1	A24 family peptidase	Machinery gene
CK627_RS01600 (CK627_01600)	coaE	290546..291160 (+)	615	WP_005305656.1	dephospho-CoA kinase	-
CK627_RS01605 (CK627_01605)	zapD	291198..291920 (+)	723	WP_026141277.1	cell division protein ZapD	-
CK627_RS01610 (CK627_01610)	yacG	291930..292124 (+)	195	WP_017782442.1	DNA gyrase inhibitor YacG	-
CK627_RS01615 (CK627_01615)	mutT	292185..292598 (-)	414	WP_026141640.1	8-oxo-dGTP diphosphatase MutT	-
CK627_RS01620 (CK627_01620)	-	292607..293785 (-)	1179	WP_095591548.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32465.81 Da
• Isoelectric Point: 6.7410

>NTDB_id=244921 CK627_RS01595 WP_095591547.1 289654..290526(+) (pilD) [Aeromonas dhakensis strain KN-Mc-6U21]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPGWALLAALLLTWGLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=244921 CK627_RS01595 WP_095591547.1 289654..290526(+) (pilD) [Aeromonas dhakensis strain KN-Mc-6U21]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCCCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTACTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTCCCACCGGGCTGGGCTT
TGCTGGCCGCCCTGCTGCTCACCTGGGGGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCATTGCTGTGGGGCGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGCTGCTGCTTTCCTCCCTG
GTCGGCGCCATCATAGGGATAAGTCTCATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTCGGGCCCTACCT
GGCGATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.888	98.621	0.61
pilD	Vibrio campbellii strain DS40M4	58.131	99.655	0.579
pilD	Acinetobacter baumannii D1279779	54.225	97.931	0.531
pilD	Acinetobacter nosocomialis M2	54.225	97.931	0.531
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462