Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   CK238_RS12170 Genome accession   NZ_CP023075
Coordinates   2455783..2456091 (-) Length   102 a.a.
NCBI ID   WP_014418376.1    Uniprot ID   -
Organism   Bacillus velezensis strain K26     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2450783..2461091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS12120 (CK238_12135) sinR 2450946..2451281 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CK238_RS12125 (CK238_12140) - 2451329..2452114 (-) 786 WP_017418136.1 TasA family protein -
  CK238_RS12130 (CK238_12145) - 2452179..2452763 (-) 585 WP_014418370.1 signal peptidase I -
  CK238_RS12135 (CK238_12150) tapA 2452735..2453406 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  CK238_RS12140 (CK238_12155) - 2453665..2453994 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CK238_RS12145 (CK238_12160) - 2454035..2454214 (-) 180 WP_003153093.1 YqzE family protein -
  CK238_RS12150 (CK238_12165) comGG 2454271..2454648 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  CK238_RS12155 (CK238_12170) comGF 2454649..2455044 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  CK238_RS12160 (CK238_12175) comGE 2455058..2455372 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  CK238_RS12165 (CK238_12180) comGD 2455356..2455793 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  CK238_RS12170 (CK238_12185) comGC 2455783..2456091 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene
  CK238_RS12175 (CK238_12190) comGB 2456096..2457133 (-) 1038 WP_053284924.1 competence type IV pilus assembly protein ComGB Machinery gene
  CK238_RS12180 (CK238_12195) comGA 2457120..2458190 (-) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  CK238_RS12185 (CK238_12200) - 2458383..2459333 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  CK238_RS12190 (CK238_12205) - 2459479..2460780 (+) 1302 WP_025649848.1 hemolysin family protein -

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11400.33 Da        Isoelectric Point: 6.4507

>NTDB_id=244778 CK238_RS12170 WP_014418376.1 2455783..2456091(-) (comGC) [Bacillus velezensis strain K26]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQRKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=244778 CK238_RS12170 WP_014418376.1 2455783..2456091(-) (comGC) [Bacillus velezensis strain K26]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCGTAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

76.289

95.098

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402

Multiple sequence alignment