Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CK238_RS12120 Genome accession   NZ_CP023075
Coordinates   2450946..2451281 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain K26     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445946..2456281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK238_RS12100 (CK238_12115) gcvT 2446552..2447652 (-) 1101 WP_017418134.1 glycine cleavage system aminomethyltransferase GcvT -
  CK238_RS12105 (CK238_12120) - 2448076..2449746 (+) 1671 WP_021494309.1 SNF2-related protein -
  CK238_RS12110 (CK238_12125) - 2449768..2450562 (+) 795 WP_014418368.1 YqhG family protein -
  CK238_RS12115 (CK238_12130) sinI 2450739..2450912 (+) 174 WP_014418369.1 anti-repressor SinI family protein Regulator
  CK238_RS12120 (CK238_12135) sinR 2450946..2451281 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  CK238_RS12125 (CK238_12140) - 2451329..2452114 (-) 786 WP_017418136.1 TasA family protein -
  CK238_RS12130 (CK238_12145) - 2452179..2452763 (-) 585 WP_014418370.1 signal peptidase I -
  CK238_RS12135 (CK238_12150) tapA 2452735..2453406 (-) 672 WP_025649852.1 amyloid fiber anchoring/assembly protein TapA -
  CK238_RS12140 (CK238_12155) - 2453665..2453994 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  CK238_RS12145 (CK238_12160) - 2454035..2454214 (-) 180 WP_003153093.1 YqzE family protein -
  CK238_RS12150 (CK238_12165) comGG 2454271..2454648 (-) 378 WP_017418138.1 competence type IV pilus minor pilin ComGG Machinery gene
  CK238_RS12155 (CK238_12170) comGF 2454649..2455044 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  CK238_RS12160 (CK238_12175) comGE 2455058..2455372 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  CK238_RS12165 (CK238_12180) comGD 2455356..2455793 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  CK238_RS12170 (CK238_12185) comGC 2455783..2456091 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=244774 CK238_RS12120 WP_003153104.1 2450946..2451281(+) (sinR) [Bacillus velezensis strain K26]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=244774 CK238_RS12120 WP_003153104.1 2450946..2451281(+) (sinR) [Bacillus velezensis strain K26]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment