Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | CJD39_RS01715 | Genome accession | NZ_CP023057 |
| Coordinates | 359732..360928 (-) | Length | 398 a.a. |
| NCBI ID | WP_111750325.1 | Uniprot ID | - |
| Organism | Glaesserella sp. 15-184 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 354732..365928
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CJD39_RS01680 (CJD39_01675) | - | 355016..355840 (+) | 825 | WP_111750318.1 | OmpH family outer membrane protein | - |
| CJD39_RS01685 (CJD39_01680) | lpxD | 355840..356865 (+) | 1026 | WP_111750319.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | - |
| CJD39_RS01690 (CJD39_01685) | fabZ | 356888..357355 (+) | 468 | WP_111750320.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| CJD39_RS01695 (CJD39_01690) | lpxA | 357383..358177 (+) | 795 | WP_111750321.1 | acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase | - |
| CJD39_RS01700 (CJD39_01695) | yacG | 358229..358408 (-) | 180 | WP_111750322.1 | DNA gyrase inhibitor YacG | - |
| CJD39_RS01705 (CJD39_01700) | coaE | 358405..359031 (-) | 627 | WP_111750323.1 | dephospho-CoA kinase | - |
| CJD39_RS01710 (CJD39_01705) | - | 359058..359735 (-) | 678 | WP_111750324.1 | prepilin peptidase | - |
| CJD39_RS01715 (CJD39_01710) | pilC | 359732..360928 (-) | 1197 | WP_111750325.1 | type II secretion system F family protein | Machinery gene |
| CJD39_RS01720 (CJD39_01715) | pilB | 360921..362306 (-) | 1386 | WP_111750326.1 | GspE/PulE family protein | Machinery gene |
| CJD39_RS01725 (CJD39_01720) | pilA | 362384..362830 (-) | 447 | WP_111750327.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| CJD39_RS01730 (CJD39_01725) | radA | 363026..364405 (+) | 1380 | WP_111750328.1 | DNA repair protein RadA | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 45420.13 Da Isoelectric Point: 10.2711
>NTDB_id=244631 CJD39_RS01715 WP_111750325.1 359732..360928(-) (pilC) [Glaesserella sp. 15-184]
MNNIYLFQWKGRNRLGQKQTGQRIATSRAVLEQQLQQKGYRQLRISRQFVLSTAPKKEEINRYIQQLAMLVQASIPLKQC
LSMLLESCQNLSFYRWQQETIRLLEAGFAFSSALEKQGKYLNAQEIQLIKMAETSGNLGIILSNIAQTREKSEKLTKKVK
KILFYPLFILTISITLSILLLIFIVPQFAELYGSKGKSLPLITNVLFILSNFLQQNIIHLILFIIISLLIISFLNKKTTI
IKKVKLLILSQLPIFKGIIQDSRIIFFCQNSSLMLASHIRLDSVLHSFLANKSDDILLQHSLASTLTFLKQGYRLADSLD
PKLFSNDVLQMIAIGEQSGKLSVMLKQISDIYQQRLDYQIDLLSQLLEPMLMLLMGIIVGTILVGLYLPIFDMGAMIE
MNNIYLFQWKGRNRLGQKQTGQRIATSRAVLEQQLQQKGYRQLRISRQFVLSTAPKKEEINRYIQQLAMLVQASIPLKQC
LSMLLESCQNLSFYRWQQETIRLLEAGFAFSSALEKQGKYLNAQEIQLIKMAETSGNLGIILSNIAQTREKSEKLTKKVK
KILFYPLFILTISITLSILLLIFIVPQFAELYGSKGKSLPLITNVLFILSNFLQQNIIHLILFIIISLLIISFLNKKTTI
IKKVKLLILSQLPIFKGIIQDSRIIFFCQNSSLMLASHIRLDSVLHSFLANKSDDILLQHSLASTLTFLKQGYRLADSLD
PKLFSNDVLQMIAIGEQSGKLSVMLKQISDIYQQRLDYQIDLLSQLLEPMLMLLMGIIVGTILVGLYLPIFDMGAMIE
Nucleotide
Download Length: 1197 bp
>NTDB_id=244631 CJD39_RS01715 WP_111750325.1 359732..360928(-) (pilC) [Glaesserella sp. 15-184]
ATGAATAACATTTACCTATTTCAATGGAAAGGGCGTAACCGCTTGGGGCAAAAACAGACGGGGCAACGTATCGCCACCAG
CCGAGCGGTACTTGAACAACAGCTACAACAAAAAGGCTATCGACAGCTACGCATTAGCCGTCAATTTGTGCTGTCAACCG
CCCCGAAAAAAGAAGAAATTAATCGATATATTCAACAACTTGCGATGTTGGTACAAGCCAGTATCCCCCTAAAACAGTGC
CTATCAATGTTGCTTGAAAGTTGCCAAAATCTCTCTTTTTACCGTTGGCAACAGGAAACGATCCGCTTGCTTGAAGCCGG
TTTTGCTTTTTCTTCTGCTTTGGAAAAACAGGGCAAGTATTTAAATGCTCAAGAGATCCAATTAATAAAAATGGCAGAAA
CAAGCGGTAATTTAGGTATTATTTTATCCAACATTGCACAAACAAGGGAAAAATCAGAAAAACTTACTAAAAAAGTGAAA
AAAATTCTGTTTTATCCATTATTTATTTTAACCATTTCCATTACGCTTTCTATTTTATTATTAATTTTTATTGTGCCACA
ATTTGCAGAACTGTATGGCTCAAAAGGAAAATCACTCCCATTGATTACTAATGTATTGTTTATATTATCTAATTTCCTTC
AACAAAACATTATTCATTTAATATTATTTATCATAATTTCATTATTGATAATTTCGTTTTTAAATAAAAAGACGACCATT
ATTAAAAAAGTAAAATTGCTTATTTTAAGCCAACTCCCGATATTTAAAGGGATTATTCAAGATTCACGAATTATCTTTTT
CTGCCAAAATAGCAGTTTAATGTTAGCATCCCACATTCGCTTAGATAGCGTACTACACTCTTTTTTAGCTAATAAAAGCG
ATGATATTTTATTGCAACATTCCCTTGCCAGCACATTAACTTTTTTAAAACAAGGCTACCGTTTAGCCGACAGTTTAGAT
CCGAAACTCTTTTCAAATGATGTGTTACAGATGATCGCTATCGGTGAGCAGAGTGGCAAACTTTCGGTGATGCTAAAACA
GATCAGCGATATTTATCAACAGCGGTTAGATTATCAGATTGATTTACTCTCACAATTGTTAGAACCAATGTTAATGTTAT
TAATGGGCATTATTGTCGGCACCATTTTAGTCGGCTTATATTTACCAATCTTTGATATGGGAGCAATGATTGAATGA
ATGAATAACATTTACCTATTTCAATGGAAAGGGCGTAACCGCTTGGGGCAAAAACAGACGGGGCAACGTATCGCCACCAG
CCGAGCGGTACTTGAACAACAGCTACAACAAAAAGGCTATCGACAGCTACGCATTAGCCGTCAATTTGTGCTGTCAACCG
CCCCGAAAAAAGAAGAAATTAATCGATATATTCAACAACTTGCGATGTTGGTACAAGCCAGTATCCCCCTAAAACAGTGC
CTATCAATGTTGCTTGAAAGTTGCCAAAATCTCTCTTTTTACCGTTGGCAACAGGAAACGATCCGCTTGCTTGAAGCCGG
TTTTGCTTTTTCTTCTGCTTTGGAAAAACAGGGCAAGTATTTAAATGCTCAAGAGATCCAATTAATAAAAATGGCAGAAA
CAAGCGGTAATTTAGGTATTATTTTATCCAACATTGCACAAACAAGGGAAAAATCAGAAAAACTTACTAAAAAAGTGAAA
AAAATTCTGTTTTATCCATTATTTATTTTAACCATTTCCATTACGCTTTCTATTTTATTATTAATTTTTATTGTGCCACA
ATTTGCAGAACTGTATGGCTCAAAAGGAAAATCACTCCCATTGATTACTAATGTATTGTTTATATTATCTAATTTCCTTC
AACAAAACATTATTCATTTAATATTATTTATCATAATTTCATTATTGATAATTTCGTTTTTAAATAAAAAGACGACCATT
ATTAAAAAAGTAAAATTGCTTATTTTAAGCCAACTCCCGATATTTAAAGGGATTATTCAAGATTCACGAATTATCTTTTT
CTGCCAAAATAGCAGTTTAATGTTAGCATCCCACATTCGCTTAGATAGCGTACTACACTCTTTTTTAGCTAATAAAAGCG
ATGATATTTTATTGCAACATTCCCTTGCCAGCACATTAACTTTTTTAAAACAAGGCTACCGTTTAGCCGACAGTTTAGAT
CCGAAACTCTTTTCAAATGATGTGTTACAGATGATCGCTATCGGTGAGCAGAGTGGCAAACTTTCGGTGATGCTAAAACA
GATCAGCGATATTTATCAACAGCGGTTAGATTATCAGATTGATTTACTCTCACAATTGTTAGAACCAATGTTAATGTTAT
TAATGGGCATTATTGTCGGCACCATTTTAGTCGGCTTATATTTACCAATCTTTGATATGGGAGCAATGATTGAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
79.899 |
100 |
0.799 |
| pilC | Haemophilus influenzae 86-028NP |
40.05 |
100 |
0.405 |
| pilC | Haemophilus influenzae Rd KW20 |
40.05 |
100 |
0.405 |