Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SAR11_RS04920 | Genome accession | NC_007205 |
| Coordinates | 965942..966400 (+) | Length | 152 a.a. |
| NCBI ID | WP_011282083.1 | Uniprot ID | Q4FLZ6 |
| Organism | Candidatus Pelagibacter ubique HTCC1062 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 960942..971400
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAR11_RS04905 (SAR11_0981) | secF | 961462..962349 (+) | 888 | WP_011282080.1 | protein translocase subunit SecF | - |
| SAR11_RS04910 (SAR11_0982) | - | 962352..962945 (-) | 594 | WP_011282081.1 | urate hydroxylase PuuD | - |
| SAR11_RS04915 (SAR11_0983) | uvrA | 962973..965852 (-) | 2880 | WP_011282082.1 | excinuclease ABC subunit UvrA | - |
| SAR11_RS04920 (SAR11_0984) | ssb | 965942..966400 (+) | 459 | WP_011282083.1 | single-stranded DNA-binding protein | Machinery gene |
| SAR11_RS04925 (SAR11_0985) | gyrA | 966406..968955 (+) | 2550 | WP_011282084.1 | DNA gyrase subunit A | - |
| SAR11_RS04930 (SAR11_0986) | coaD | 968955..969449 (+) | 495 | WP_011282085.1 | pantetheine-phosphate adenylyltransferase | - |
| SAR11_RS04935 (SAR11_0987) | - | 969442..969996 (+) | 555 | WP_011282086.1 | peptidylprolyl isomerase | - |
| SAR11_RS04940 (SAR11_0988) | tgt | 970015..971127 (+) | 1113 | WP_011282087.1 | tRNA guanosine(34) transglycosylase Tgt | - |
Sequence
Protein
Download Length: 152 a.a. Molecular weight: 16695.62 Da Isoelectric Point: 5.2440
>NTDB_id=24449 SAR11_RS04920 WP_011282083.1 965942..966400(+) (ssb) [Candidatus Pelagibacter ubique HTCC1062]
MAGSLNKVLLIGRLGADPEIKQMVNGKSVARLSLATSQSWKDKTTGEKKEKTEWHRIVVFNDGLVNVVQQYLKKGAQIYV
EGQIATRKWKDEQSGQDKYSTEIVIQGYNSSLTMLGGGNTGGGIQNDNTQGPANNFEDSPQTSNDMDDEIPF
MAGSLNKVLLIGRLGADPEIKQMVNGKSVARLSLATSQSWKDKTTGEKKEKTEWHRIVVFNDGLVNVVQQYLKKGAQIYV
EGQIATRKWKDEQSGQDKYSTEIVIQGYNSSLTMLGGGNTGGGIQNDNTQGPANNFEDSPQTSNDMDDEIPF
Nucleotide
Download Length: 459 bp
>NTDB_id=24449 SAR11_RS04920 WP_011282083.1 965942..966400(+) (ssb) [Candidatus Pelagibacter ubique HTCC1062]
ATGGCTGGAAGTTTAAATAAAGTATTATTAATTGGGCGTTTAGGCGCAGACCCTGAAATTAAACAAATGGTAAACGGCAA
AAGCGTTGCAAGATTGAGTTTAGCAACTAGTCAATCATGGAAAGACAAGACAACAGGTGAAAAAAAAGAAAAGACTGAGT
GGCACCGAATAGTTGTATTCAATGATGGGTTAGTAAATGTTGTTCAGCAATATTTAAAAAAAGGAGCTCAAATTTATGTT
GAAGGACAAATAGCTACTAGAAAATGGAAAGATGAACAATCTGGACAAGACAAATATTCTACAGAAATTGTAATTCAAGG
ATATAACTCTTCACTAACAATGTTAGGTGGAGGAAATACTGGTGGTGGAATCCAAAATGATAACACACAAGGACCTGCTA
ATAATTTTGAAGATAGTCCACAAACTTCAAATGATATGGATGACGAAATTCCATTTTAG
ATGGCTGGAAGTTTAAATAAAGTATTATTAATTGGGCGTTTAGGCGCAGACCCTGAAATTAAACAAATGGTAAACGGCAA
AAGCGTTGCAAGATTGAGTTTAGCAACTAGTCAATCATGGAAAGACAAGACAACAGGTGAAAAAAAAGAAAAGACTGAGT
GGCACCGAATAGTTGTATTCAATGATGGGTTAGTAAATGTTGTTCAGCAATATTTAAAAAAAGGAGCTCAAATTTATGTT
GAAGGACAAATAGCTACTAGAAAATGGAAAGATGAACAATCTGGACAAGACAAATATTCTACAGAAATTGTAATTCAAGG
ATATAACTCTTCACTAACAATGTTAGGTGGAGGAAATACTGGTGGTGGAATCCAAAATGATAACACACAAGGACCTGCTA
ATAATTTTGAAGATAGTCCACAAACTTCAAATGATATGGATGACGAAATTCCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
44.828 |
100 |
0.513 |
| ssb | Glaesserella parasuis strain SC1401 |
51.471 |
89.474 |
0.461 |
| ssb | Neisseria gonorrhoeae MS11 |
36.667 |
100 |
0.434 |
| ssb | Neisseria meningitidis MC58 |
35.556 |
100 |
0.421 |