Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PSYC_RS09745 Genome accession   NC_007204
Coordinates   2319745..2320800 (-) Length   351 a.a.
NCBI ID   WP_011281141.1    Uniprot ID   Q4FQH7
Organism   Psychrobacter arcticus 273-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2314745..2325800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYC_RS09720 (Psyc_1878) aroK 2314791..2315351 (-) 561 WP_011281136.1 shikimate kinase AroK -
  PSYC_RS09725 (Psyc_1879) pilQ 2315518..2317788 (-) 2271 WP_011281137.1 type IV pilus secretin PilQ -
  PSYC_RS09730 (Psyc_1880) - 2317816..2318355 (-) 540 WP_011281138.1 pilus assembly protein PilP -
  PSYC_RS09735 (Psyc_1881) - 2318355..2319083 (-) 729 WP_011281139.1 type 4a pilus biogenesis protein PilO -
  PSYC_RS09740 (Psyc_1882) - 2319080..2319745 (-) 666 WP_011281140.1 PilN domain-containing protein -
  PSYC_RS09745 (Psyc_1883) comM 2319745..2320800 (-) 1056 WP_011281141.1 type IV pilus assembly protein PilM Machinery gene
  PSYC_RS09750 (Psyc_1884) - 2320996..2323602 (+) 2607 WP_011281142.1 penicillin-binding protein 1A -
  PSYC_RS09755 (Psyc_1885) - 2323944..2324483 (-) 540 WP_011281143.1 DUF6586 family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38196.31 Da        Isoelectric Point: 4.3265

>NTDB_id=24436 PSYC_RS09745 WP_011281141.1 2319745..2320800(-) (comM) [Psychrobacter arcticus 273-4]
MRLFTSKSRYLIGVDIGTTSVKLVDIQRQQGVFHLRSYGTEILSEGIVIDKLIVDTEAVGNTIAGLARRCQAVGSSAATA
VSGSAVITKIIDMDMVLNDVEREAQIRLDADQYIPYPLDDVNLDFEVLGPSLINDDMVQVLLAASRSENVDQRVDALTFG
GLQTKVMDIESHAIERAFGLMVDSLPNLPELVALVDIGHNQTTLYVAKNGEFIYSREQLFGGSQLTEAIQNRYGLSAEEA
SISQREHALPEDYYPDVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSAIAGLAGMAQQRLGVPVSIANPFIN
MTIAPHIDHEQLAIDAPSLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=24436 PSYC_RS09745 WP_011281141.1 2319745..2320800(-) (comM) [Psychrobacter arcticus 273-4]
GTGAGGCTATTTACTTCTAAGAGTCGATATTTGATTGGCGTGGATATTGGTACCACCTCAGTCAAGCTGGTTGACATACA
GCGCCAACAAGGCGTTTTCCACCTAAGATCTTATGGTACTGAAATATTATCTGAAGGCATAGTCATTGATAAACTCATTG
TAGACACTGAAGCGGTAGGTAATACTATAGCAGGCTTGGCTCGACGTTGCCAAGCGGTGGGCAGTAGTGCTGCCACTGCA
GTCTCAGGGTCCGCGGTGATTACCAAAATCATCGATATGGATATGGTGCTAAATGACGTGGAGCGTGAAGCTCAGATTCG
CTTGGATGCGGACCAATACATACCTTATCCGCTAGATGATGTCAATTTGGACTTTGAGGTATTGGGTCCGTCGCTTATAA
ATGACGATATGGTGCAAGTGTTACTTGCTGCCTCTCGCTCAGAAAACGTCGATCAAAGGGTTGATGCCTTGACATTCGGT
GGTCTGCAAACCAAAGTGATGGATATTGAGTCTCATGCCATTGAGCGTGCTTTTGGCTTGATGGTAGACAGTCTGCCAAA
CTTGCCAGAGTTGGTGGCGTTGGTCGATATCGGACACAATCAAACAACTTTATATGTCGCCAAAAATGGCGAATTCATCT
ATAGCCGTGAGCAGCTATTTGGTGGTAGCCAGCTGACGGAAGCCATCCAAAACCGCTATGGTTTGTCTGCTGAAGAAGCT
TCTATTAGTCAGCGCGAGCATGCCTTACCTGAAGATTACTATCCCGATGTCTTAACGCCATTTATAGAAAATACCATTCA
ACAAATCACTCGCTCTTTACAGTTTTATTTTTCTTCAAGTCAATATAGTAGTATCGACCATGTGGTCCTTGCTGGTGGTA
GCAGCGCCATAGCAGGTCTTGCTGGTATGGCGCAGCAAAGATTGGGCGTGCCTGTGAGTATTGCAAATCCGTTCATTAAT
ATGACCATCGCTCCGCATATCGATCATGAGCAACTAGCGATTGATGCACCCAGTTTAATGGCCGCTTGCGGTCTGGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4FQH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.142

100

0.501
  pilM Acinetobacter baumannii D1279779

50.142

100

0.501
  comM Acinetobacter baylyi ADP1

48.433

100

0.484
  pilM Legionella pneumophila strain ERS1305867

40.51

100

0.407

Multiple sequence alignment