Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   PSYC_RS09410 Genome accession   NC_007204
Coordinates   2236056..2236433 (-) Length   125 a.a.
NCBI ID   WP_011281077.1    Uniprot ID   -
Organism   Psychrobacter arcticus 273-4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2231056..2241433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYC_RS09390 (Psyc_1814) - 2232248..2233237 (-) 990 WP_041757772.1 CheR family methyltransferase -
  PSYC_RS09395 (Psyc_1815) - 2233444..2234436 (-) 993 Protein_1861 methyl-accepting chemotaxis protein -
  PSYC_RS09400 (Psyc_1816) - 2234982..2235512 (-) 531 WP_011281075.1 chemotaxis protein CheW -
  PSYC_RS09405 (Psyc_1817) - 2235516..2235878 (-) 363 WP_011281076.1 response regulator -
  PSYC_RS09410 (Psyc_1818) pilG 2236056..2236433 (-) 378 WP_011281077.1 twitching motility response regulator PilG Regulator
  PSYC_RS09415 (Psyc_1819) - 2237312..2238430 (+) 1119 WP_011281078.1 efflux RND transporter periplasmic adaptor subunit -
  PSYC_RS09420 (Psyc_1820) - 2238714..2239436 (+) 723 WP_011281079.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14049.20 Da        Isoelectric Point: 5.2027

>NTDB_id=24435 PSYC_RS09410 WP_011281077.1 2236056..2236433(-) (pilG) [Psychrobacter arcticus 273-4]
MQNNFDGLKVMVIDDSKTIRRTAETLLQKAGCEVVTAIDGFDALAKIVDHNPDIIFVDIMMPRLDGYQTCALIKNNPDYA
SKPVIMLSSKDGLFDKARGRIVGSDEYLTKPFSKDELFEAINKYR

Nucleotide


Download         Length: 378 bp        

>NTDB_id=24435 PSYC_RS09410 WP_011281077.1 2236056..2236433(-) (pilG) [Psychrobacter arcticus 273-4]
ATGCAAAATAATTTTGATGGTTTAAAAGTGATGGTTATTGATGATTCAAAAACCATTCGCCGTACCGCAGAAACCTTGCT
GCAAAAAGCTGGCTGCGAAGTTGTAACTGCCATTGATGGGTTTGATGCCTTGGCTAAAATTGTCGATCATAATCCAGATA
TTATTTTTGTGGATATCATGATGCCGCGTTTGGATGGTTATCAGACGTGTGCTTTGATTAAGAATAATCCTGACTATGCC
AGCAAGCCTGTCATTATGTTGTCATCTAAAGATGGTTTATTTGATAAAGCACGTGGACGCATTGTGGGTTCTGATGAGTA
TCTGACCAAACCGTTTAGTAAGGATGAGCTTTTTGAGGCGATTAATAAGTATCGTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.613

99.2

0.76
  vicR Streptococcus mutans UA159

40.517

92.8

0.376
  micA Streptococcus pneumoniae Cp1015

42.202

87.2

0.368
  pilH Synechocystis sp. PCC 6803

39.474

91.2

0.36

Multiple sequence alignment