Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSYC_RS08725 Genome accession   NC_007204
Coordinates   2082784..2083425 (-) Length   213 a.a.
NCBI ID   WP_011280947.1    Uniprot ID   Q4FR27
Organism   Psychrobacter arcticus 273-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2077784..2088425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYC_RS08705 (Psyc_1679) epmB 2078442..2079449 (-) 1008 WP_011280943.1 EF-P beta-lysylation protein EpmB -
  PSYC_RS08710 (Psyc_1680) efp 2079644..2080216 (+) 573 WP_011280944.1 elongation factor P -
  PSYC_RS08715 (Psyc_1681) - 2080446..2081336 (-) 891 WP_011280945.1 tRNA threonylcarbamoyladenosine dehydratase -
  PSYC_RS08720 (Psyc_1682) - 2081409..2082416 (-) 1008 WP_011280946.1 TatD family hydrolase -
  PSYC_RS08725 (Psyc_1683) ssb 2082784..2083425 (-) 642 WP_011280947.1 single-stranded DNA-binding protein Machinery gene
  PSYC_RS08730 (Psyc_1684) - 2083535..2084899 (-) 1365 WP_011280948.1 MFS transporter -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22791.68 Da        Isoelectric Point: 6.2422

>NTDB_id=24433 PSYC_RS08725 WP_011280947.1 2082784..2083425(-) (ssb) [Psychrobacter arcticus 273-4]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDPNGQDRYITEIRAEQMQMLDGATGGSGDGSGFASNNQQGGYGNQGGGFSNQGGQNDYGQQGGNQPAHQGGY
NQGGGAAQGGHQNIFNNQKAPAQQKPFDQPTQAPAQSKPTAMLDGPVDDDIPF

Nucleotide


Download         Length: 642 bp        

>NTDB_id=24433 PSYC_RS08725 WP_011280947.1 2082784..2083425(-) (ssb) [Psychrobacter arcticus 273-4]
ATGCGCGGTGTTAATAAAGTTATCATCATCGGTAACCTCGGTGCAGACCCTGAGGCACGTCAATTCAATAACGGCGGTAG
CGTGACCAATATCTCGGTTGCGACATCAGAGCAGTGGACAGACAAGCAAAGCGGTGAAAAAAGAGAAGCAACAGAATGGC
ATCGTATTTCATTGTTCAATCGCTTGGGTGAAATCGCCGCGCAGTATCTTCGTAAAGGCAGTAAAGTCTATATTGAAGGC
AGCTTGCGCACCCGTAAATATCAAGATCCCAATGGACAAGACCGTTATATTACTGAAATTCGTGCTGAACAAATGCAGAT
GCTAGATGGTGCGACAGGTGGTAGTGGCGATGGCAGTGGCTTTGCTAGCAATAACCAACAAGGTGGCTATGGCAATCAGG
GTGGCGGATTTAGTAACCAAGGTGGCCAGAACGACTATGGTCAGCAAGGAGGCAATCAGCCAGCTCATCAAGGTGGTTAT
AACCAAGGTGGCGGTGCAGCTCAAGGTGGCCATCAAAACATCTTTAATAATCAAAAAGCGCCTGCGCAGCAAAAACCGTT
CGATCAGCCAACTCAAGCACCGGCACAGTCGAAACCGACTGCCATGCTAGATGGTCCTGTAGACGATGACATTCCTTTCT
AG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4FR27

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.826

100

0.488
  ssb Vibrio cholerae strain A1552

44.444

100

0.451
  ssb Neisseria gonorrhoeae MS11

37.85

100

0.38
  ssb Neisseria meningitidis MC58

37.85

100

0.38

Multiple sequence alignment