Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CKA81_RS11730 Genome accession   NZ_CP022987
Coordinates   2425362..2425820 (-) Length   152 a.a.
NCBI ID   WP_128355426.1    Uniprot ID   A0A410GDP4
Organism   Pollutimonas thiosulfatoxidans strain YE3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2420362..2430820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKA81_RS11705 (CKA81_11725) - 2420469..2420735 (+) 267 Protein_2299 DDE-type integrase/transposase/recombinase -
  CKA81_RS11720 (CKA81_11740) mobF 2421124..2424021 (+) 2898 WP_128355425.1 MobF family relaxase -
  CKA81_RS11725 (CKA81_11745) - 2424571..2425245 (+) 675 WP_128356760.1 SOS response-associated peptidase -
  CKA81_RS11730 (CKA81_11750) ssb 2425362..2425820 (-) 459 WP_128355426.1 single-stranded DNA-binding protein Machinery gene
  CKA81_RS11735 (CKA81_11755) - 2425887..2426696 (-) 810 WP_128355427.1 DUF3560 domain-containing protein -
  CKA81_RS11740 (CKA81_11760) - 2427418..2428215 (+) 798 WP_199287535.1 HNH endonuclease -
  CKA81_RS11745 (CKA81_11765) - 2428280..2428807 (-) 528 WP_128355429.1 JAB domain-containing protein -
  CKA81_RS11750 (CKA81_11770) - 2429218..2430489 (-) 1272 WP_164878465.1 IS256 family transposase -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16818.79 Da        Isoelectric Point: 8.0146

>NTDB_id=243880 CKA81_RS11730 WP_128355426.1 2425362..2425820(-) (ssb) [Pollutimonas thiosulfatoxidans strain YE3]
MASLNRATLIGNLGKDPEVRYTAEGAAVCSASIATTHQWKDKATGERREETEWHRVVFYGRLAEIAGEYLRKGRTVFVEG
RLKTRKWQDADTGTDRYTTEIIADQMQMLGSRETAKDETAQAAPAARPKGRSSKAKAPTATPDEIDTSDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=243880 CKA81_RS11730 WP_128355426.1 2425362..2425820(-) (ssb) [Pollutimonas thiosulfatoxidans strain YE3]
ATGGCATCGTTGAACCGCGCCACTCTGATCGGCAACCTTGGCAAAGACCCCGAAGTCCGCTACACCGCAGAAGGTGCAGC
CGTCTGCTCAGCGTCGATTGCTACGACTCACCAATGGAAGGACAAGGCCACAGGCGAGCGCCGCGAAGAAACCGAATGGC
ACCGCGTCGTTTTCTATGGCCGACTGGCTGAAATTGCCGGTGAATATCTGCGCAAAGGCCGCACGGTATTCGTGGAAGGC
CGCCTGAAAACCCGCAAGTGGCAGGACGCCGACACCGGCACAGACCGTTACACCACGGAAATCATTGCCGACCAAATGCA
GATGTTGGGCAGCAGGGAAACCGCCAAGGATGAAACTGCACAAGCTGCACCGGCAGCCCGCCCGAAAGGCCGCAGCAGCA
AGGCGAAGGCACCCACTGCAACGCCTGACGAAATCGATACATCAGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A410GDP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.589

84.868

0.48
  ssb Glaesserella parasuis strain SC1401

58.974

76.974

0.454
  ssb Neisseria meningitidis MC58

45.638

98.026

0.447
  ssb Neisseria gonorrhoeae MS11

48.12

87.5

0.421

Multiple sequence alignment