Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ010_RS20720 Genome accession   NZ_CP022958
Coordinates   4483525..4484016 (-) Length   163 a.a.
NCBI ID   WP_141019809.1    Uniprot ID   A0A4Y6L0I3
Organism   Azoarcus sp. DD4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4478525..4489016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ010_RS20705 (CJ010_20645) - 4479267..4479728 (-) 462 WP_141019806.1 response regulator -
  CJ010_RS20710 (CJ010_20650) - 4479725..4482334 (-) 2610 WP_141019807.1 PAS domain S-box protein -
  CJ010_RS20715 (CJ010_20655) - 4482337..4483293 (-) 957 WP_168224994.1 ABC transporter substrate-binding protein -
  CJ010_RS20720 (CJ010_20660) ssb 4483525..4484016 (-) 492 WP_141019809.1 single-stranded DNA-binding protein Machinery gene
  CJ010_RS20725 (CJ010_20665) - 4484084..4485265 (-) 1182 WP_141019810.1 MFS transporter -
  CJ010_RS20730 (CJ010_20670) uvrA 4485404..4488229 (+) 2826 WP_141019811.1 excinuclease ABC subunit UvrA -
  CJ010_RS20735 (CJ010_20675) - 4488328..4488627 (+) 300 WP_141019812.1 hypothetical protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18019.91 Da        Isoelectric Point: 5.9703

>NTDB_id=243726 CJ010_RS20720 WP_141019809.1 4483525..4484016(-) (ssb) [Azoarcus sp. DD4]
MASLNKVILIGNLGADPESRFAPSGDAICNIRLATTENWRDKATGERREATEWHRVSFYGKLAEIAGQYLRKGSQVYIEG
SLRTRKWQDQNGQERYTTEIRADEMKMLGGRREGGDAPMRGGDDGAYSAPAQRPQAAPQQAPSRPAPQRDSGGFGDFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=243726 CJ010_RS20720 WP_141019809.1 4483525..4484016(-) (ssb) [Azoarcus sp. DD4]
ATGGCATCCCTCAATAAAGTGATCCTGATCGGCAACCTCGGCGCCGATCCGGAAAGCCGCTTCGCCCCGTCGGGCGACGC
GATCTGCAACATCCGTCTGGCGACCACCGAGAACTGGCGCGACAAGGCGACCGGCGAGCGGCGCGAGGCCACCGAATGGC
ACCGTGTGTCCTTCTACGGCAAGCTGGCTGAAATTGCCGGCCAGTATCTGCGCAAGGGCAGTCAGGTCTACATCGAAGGC
AGCCTGCGCACCCGCAAGTGGCAGGACCAGAACGGCCAGGAGCGCTACACGACCGAGATCCGTGCCGACGAGATGAAGAT
GCTCGGCGGCCGCCGCGAAGGCGGCGACGCACCGATGCGCGGCGGCGACGACGGCGCATACAGCGCACCGGCGCAGCGCC
CGCAGGCTGCGCCACAGCAGGCGCCGTCGCGTCCGGCGCCACAGCGCGATAGCGGTGGCTTCGGCGACTTCGACGACGAC
ATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6L0I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.303

100

0.626
  ssb Glaesserella parasuis strain SC1401

51.053

100

0.595
  ssb Neisseria meningitidis MC58

51.149

100

0.546
  ssb Neisseria gonorrhoeae MS11

51.149

100

0.546

Multiple sequence alignment