Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NTHI_RS00500 | Genome accession | NC_007146 |
| Coordinates | 99930..100352 (+) | Length | 140 a.a. |
| NCBI ID | WP_005687556.1 | Uniprot ID | A0A377IYS1 |
| Organism | Haemophilus influenzae 86-028NP | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 92194..148666 | 99930..100352 | within | 0 |
Gene organization within MGE regions
Location: 92194..148666
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NTHI_RS00460 (NTHI0101) | - | 92334..93170 (+) | 837 | WP_011271825.1 | ParA family protein | - |
| NTHI_RS00465 (NTHI0102) | dnaB | 93172..94527 (+) | 1356 | WP_011271826.1 | replicative DNA helicase | - |
| NTHI_RS00470 (NTHI0103) | - | 94520..96220 (+) | 1701 | WP_011271827.1 | ParB family protein | - |
| NTHI_RS00475 (NTHI0104) | - | 96220..96771 (+) | 552 | WP_005653590.1 | DUF2857 domain-containing protein | - |
| NTHI_RS00480 (NTHI0106) | - | 96921..98144 (+) | 1224 | WP_011271828.1 | STY4528 family pathogenicity island replication protein | - |
| NTHI_RS00490 (NTHI0107) | - | 98441..99196 (+) | 756 | WP_005667775.1 | PFL_4669 family integrating conjugative element protein | - |
| NTHI_RS00495 (NTHI0108) | - | 99211..99684 (+) | 474 | WP_005653583.1 | DUF3158 family protein | - |
| NTHI_RS00500 (NTHI0109) | ssb | 99930..100352 (+) | 423 | WP_005687556.1 | single-stranded DNA-binding protein | Machinery gene |
| NTHI_RS00505 (NTHI0110) | - | 100379..100897 (+) | 519 | WP_005687559.1 | membrane lipoprotein lipid attachment site-containing protein | - |
| NTHI_RS00510 (NTHI0111) | - | 101113..101670 (-) | 558 | WP_011271830.1 | plasmid fertility inhibition factor family protein | - |
| NTHI_RS00515 (NTHI0112) | - | 101761..103806 (+) | 2046 | WP_014326561.1 | DNA topoisomerase III | - |
| NTHI_RS00520 (NTHI0113) | - | 104691..105119 (+) | 429 | WP_011271832.1 | STY4534 family ICE replication protein | - |
| NTHI_RS00525 (NTHI0115) | - | 105234..105875 (+) | 642 | WP_011271833.1 | DUF3560 domain-containing protein | - |
| NTHI_RS00530 (NTHI0116) | - | 105910..106317 (+) | 408 | WP_011271834.1 | hypothetical protein | - |
| NTHI_RS00535 (NTHI0117) | radC | 106418..106888 (+) | 471 | WP_011271835.1 | RadC family protein | - |
| NTHI_RS00540 (NTHI0118) | - | 106981..107577 (+) | 597 | WP_011271836.1 | hypothetical protein | - |
| NTHI_RS00545 (NTHI0119) | - | 107635..108399 (+) | 765 | WP_011271837.1 | TraX family protein | - |
| NTHI_RS00550 (NTHI0120) | - | 108498..109127 (+) | 630 | WP_011271838.1 | lipoprotein | - |
| NTHI_RS00555 (NTHI0121) | - | 109131..109871 (+) | 741 | WP_011271839.1 | TIGR03759 family integrating conjugative element protein | - |
| NTHI_RS00560 (NTHI0122) | - | 109850..110608 (+) | 759 | WP_011271840.1 | transglycosylase SLT domain-containing protein | - |
| NTHI_RS00565 (NTHI0123) | - | 110624..111130 (+) | 507 | WP_011271841.1 | integrating conjugative element protein | - |
| NTHI_RS00570 (NTHI0125) | traD | 111127..113376 (+) | 2250 | WP_011271842.1 | type IV conjugative transfer system coupling protein TraD | - |
| NTHI_RS00575 | - | 113360..113695 (+) | 336 | WP_005687581.1 | hypothetical protein | - |
| NTHI_RS00580 (NTHI0126) | - | 113695..114381 (+) | 687 | WP_005687582.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| NTHI_RS00585 (NTHI0127) | - | 114542..114862 (+) | 321 | WP_005687583.1 | RAQPRD family integrative conjugative element protein | - |
| NTHI_RS00590 | - | 114866..115111 (+) | 246 | WP_005687584.1 | DUF3262 family protein | - |
| NTHI_RS00595 (NTHI0128) | - | 115131..115532 (+) | 402 | WP_005687585.1 | DUF2976 domain-containing protein | - |
| NTHI_RS00600 (NTHI0129) | - | 115552..115923 (+) | 372 | WP_011271844.1 | TIGR03750 family conjugal transfer protein | - |
| NTHI_RS00605 (NTHI0130) | - | 115935..116579 (+) | 645 | WP_011271845.1 | PFL_4703 family integrating conjugative element protein | - |
| NTHI_RS00610 (NTHI0131) | - | 116579..117448 (+) | 870 | WP_011271846.1 | TIGR03749 family integrating conjugative element protein | - |
| NTHI_RS00615 (NTHI0132) | - | 117459..118859 (+) | 1401 | WP_011271847.1 | TIGR03752 family integrating conjugative element protein | - |
| NTHI_RS00620 (NTHI0133) | - | 118869..119276 (+) | 408 | WP_011271848.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| NTHI_RS00625 (NTHI0134) | - | 119292..122162 (+) | 2871 | WP_011271849.1 | conjugative transfer ATPase | - |
| NTHI_RS00630 (NTHI0135) | - | 122134..122577 (+) | 444 | WP_005687593.1 | hypothetical protein | - |
| NTHI_RS00635 (NTHI0136) | - | 122587..122910 (+) | 324 | WP_011271851.1 | hypothetical protein | - |
| NTHI_RS00640 (NTHI0137) | - | 122919..124412 (+) | 1494 | WP_011271852.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NTHI_RS00645 (NTHI0139) | - | 124468..124797 (-) | 330 | WP_005667844.1 | hypothetical protein | - |
| NTHI_RS00650 (NTHI0141) | - | 124955..127960 (-) | 3006 | WP_001143760.1 | Tn3-like element Tn3 family transposase | - |
| NTHI_RS00655 (NTHI0142) | - | 128124..128681 (+) | 558 | WP_001235713.1 | recombinase family protein | - |
| NTHI_RS00660 (NTHI2055) | - | 128729..129589 (+) | 861 | WP_000027057.1 | broad-spectrum class A beta-lactamase TEM-1 | - |
| NTHI_RS00665 (NTHI0143) | - | 129813..129992 (+) | 180 | WP_005667851.1 | hypothetical protein | - |
| NTHI_RS00670 (NTHI0144) | - | 130037..130444 (-) | 408 | WP_005667853.1 | hypothetical protein | - |
| NTHI_RS00675 (NTHI0145) | - | 130460..132460 (-) | 2001 | WP_005687597.1 | integrating conjugative element protein | - |
| NTHI_RS00680 (NTHI0146) | - | 132475..133416 (-) | 942 | WP_011271853.1 | TIGR03756 family integrating conjugative element protein | - |
| NTHI_RS00685 (NTHI0147) | - | 133413..133850 (-) | 438 | WP_005687600.1 | TIGR03757 family integrating conjugative element protein | - |
| NTHI_RS00690 (NTHI0148) | - | 134231..134587 (+) | 357 | WP_005653504.1 | hypothetical protein | - |
| NTHI_RS00695 (NTHI0149) | - | 134672..134905 (+) | 234 | WP_005653503.1 | hypothetical protein | - |
| NTHI_RS00700 (NTHI0150) | - | 134959..135156 (+) | 198 | WP_015701374.1 | hypothetical protein | - |
| NTHI_RS09875 (NTHI0151) | - | 135160..135318 (+) | 159 | WP_005687605.1 | hypothetical protein | - |
| NTHI_RS00705 (NTHI0152) | - | 135449..136402 (+) | 954 | WP_011271856.1 | ArdC family protein | - |
| NTHI_RS00710 (NTHI0153) | - | 136506..137267 (+) | 762 | WP_011271857.1 | N-6 DNA methylase | - |
| NTHI_RS00715 (NTHI0154) | - | 137493..138059 (+) | 567 | WP_011271858.1 | hypothetical protein | - |
| NTHI_RS00720 (NTHI0155) | - | 138099..138473 (+) | 375 | WP_011271859.1 | hypothetical protein | - |
| NTHI_RS00725 (NTHI0156) | - | 138463..139140 (+) | 678 | WP_011271860.1 | hypothetical protein | - |
| NTHI_RS00730 (NTHI0157) | - | 139118..139735 (+) | 618 | WP_011271861.1 | hypothetical protein | - |
| NTHI_RS00740 (NTHI0158) | - | 139999..140598 (-) | 600 | WP_011271862.1 | recombinase family protein | - |
| NTHI_RS00745 (NTHI0159) | - | 140613..140804 (-) | 192 | WP_005653495.1 | hypothetical protein | - |
| NTHI_RS00750 | - | 140819..141106 (-) | 288 | WP_015701375.1 | hypothetical protein | - |
| NTHI_RS00755 (NTHI0160) | - | 141273..141509 (-) | 237 | WP_015701376.1 | hypothetical protein | - |
| NTHI_RS00760 | - | 141531..141818 (-) | 288 | WP_015701377.1 | hypothetical protein | - |
| NTHI_RS00765 | - | 142196..142474 (+) | 279 | WP_041174726.1 | hypothetical protein | - |
| NTHI_RS00770 (NTHI0161) | - | 142718..143431 (+) | 714 | WP_011271864.1 | Abi family protein | - |
| NTHI_RS00775 (NTHI0162) | - | 144151..145404 (+) | 1254 | WP_011271865.1 | hypothetical protein | - |
| NTHI_RS00780 (NTHI0163) | mobH | 145562..147463 (+) | 1902 | WP_040976641.1 | MobH family relaxase | - |
| NTHI_RS00785 (NTHI0164) | - | 147524..148366 (+) | 843 | WP_011271867.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 15716.54 Da Isoelectric Point: 5.7558
>NTDB_id=24363 NTHI_RS00500 WP_005687556.1 99930..100352(+) (ssb) [Haemophilus influenzae 86-028NP]
MAGINKVIIVGHLGNDPEMRSMPNGEAVANISVATSEAWTDKNTGERREVTEWHRIVFYRKLAEICGQYLKKGAQVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGTRPQSADGANNSQPMPQQDASANAFDDSIPF
MAGINKVIIVGHLGNDPEMRSMPNGEAVANISVATSEAWTDKNTGERREVTEWHRIVFYRKLAEICGQYLKKGAQVYIEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGTRPQSADGANNSQPMPQQDASANAFDDSIPF
Nucleotide
Download Length: 423 bp
>NTDB_id=24363 NTHI_RS00500 WP_005687556.1 99930..100352(+) (ssb) [Haemophilus influenzae 86-028NP]
ATGGCTGGAATTAATAAAGTAATTATCGTGGGACATTTAGGTAATGATCCTGAAATGCGAAGCATGCCGAATGGTGAAGC
AGTTGCAAATATCAGTGTAGCAACTAGCGAAGCTTGGACGGATAAAAACACCGGTGAACGTCGTGAAGTGACTGAATGGC
ATCGAATCGTTTTTTATCGCAAATTAGCTGAAATTTGCGGCCAATATCTCAAGAAAGGAGCGCAAGTTTATATTGAAGGA
CGCTTGCGTACTCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTATACCACGGAAATCCAAGGTGATGTAATGCAAAT
GTTAGGTACTCGCCCTCAAAGTGCAGATGGTGCAAATAATTCTCAGCCAATGCCACAACAAGATGCATCGGCAAATGCTT
TTGATGATTCAATACCATTCTGA
ATGGCTGGAATTAATAAAGTAATTATCGTGGGACATTTAGGTAATGATCCTGAAATGCGAAGCATGCCGAATGGTGAAGC
AGTTGCAAATATCAGTGTAGCAACTAGCGAAGCTTGGACGGATAAAAACACCGGTGAACGTCGTGAAGTGACTGAATGGC
ATCGAATCGTTTTTTATCGCAAATTAGCTGAAATTTGCGGCCAATATCTCAAGAAAGGAGCGCAAGTTTATATTGAAGGA
CGCTTGCGTACTCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTATACCACGGAAATCCAAGGTGATGTAATGCAAAT
GTTAGGTACTCGCCCTCAAAGTGCAGATGGTGCAAATAATTCTCAGCCAATGCCACAACAAGATGCATCGGCAAATGCTT
TTGATGATTCAATACCATTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
56.111 |
100 |
0.721 |
| ssb | Vibrio cholerae strain A1552 |
52.023 |
100 |
0.643 |
| ssb | Neisseria meningitidis MC58 |
59.13 |
82.143 |
0.486 |
| ssb | Neisseria gonorrhoeae MS11 |
59.13 |
82.143 |
0.486 |