Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSYR_RS23385 Genome accession   NC_007005
Coordinates   5382540..5383091 (-) Length   183 a.a.
NCBI ID   WP_011269089.1    Uniprot ID   -
Organism   Pseudomonas syringae pv. syringae B728a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5374119..5382171 5382540..5383091 flank 369


Gene organization within MGE regions


Location: 5374119..5383091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSYR_RS23350 (Psyr_4510) - 5374119..5374988 (+) 870 WP_011269081.1 ImmA/IrrE family metallo-endopeptidase -
  PSYR_RS23355 (Psyr_4511) - 5374960..5376048 (+) 1089 WP_011269082.1 beta family protein -
  PSYR_RS23360 (Psyr_4512) - 5376004..5376594 (-) 591 WP_011269083.1 sce7726 family protein -
  PSYR_RS23365 (Psyr_4514) - 5377780..5378865 (-) 1086 WP_011269085.1 PIN domain-containing protein -
  PSYR_RS23370 (Psyr_4515) - 5378999..5380117 (-) 1119 WP_164920517.1 hypothetical protein -
  PSYR_RS27215 - 5380271..5380483 (+) 213 WP_110765482.1 hypothetical protein -
  PSYR_RS27395 (Psyr_4516) mauJ 5380667..5381140 (+) 474 WP_337459449.1 methylamine utilization protein MauJ -
  PSYR_RS23380 (Psyr_4517) - 5381044..5382201 (-) 1158 WP_011269088.1 SEC-C metal-binding domain-containing protein -
  PSYR_RS23385 (Psyr_4518) ssb 5382540..5383091 (-) 552 WP_011269089.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20364.47 Da        Isoelectric Point: 5.9539

>NTDB_id=24340 PSYR_RS23385 WP_011269089.1 5382540..5383091(-) (ssb) [Pseudomonas syringae pv. syringae B728a]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGEKKEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQGDAQQGQGGGGNYNQSAPRPQQSRPQQSAPQQNYNQQQPQRDSR
PAPPQQAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=24340 PSYR_RS23385 WP_011269089.1 5382540..5383091(-) (ssb) [Pseudomonas syringae pv. syringae B728a]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTTCGCTACTTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACTGACAAGCAGAGCGGCGAGAAAAAAGAAAAAACCGAAT
GGCACCGTGTTTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTGGGCGGCCGTCCACAGGGTGACGCTCAACAAGGTCAGGGCGGTGGTGGCAACTACAACCAGTCCGCAC
CTCGTCCACAGCAGTCACGCCCACAACAGTCGGCACCGCAGCAGAACTACAACCAGCAGCAGCCACAACGCGACTCGCGT
CCAGCGCCGCCACAACAAGCGCCGCAGCCAGCTGCTGACTTTGATAGCTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.757

100

0.574
  ssb Glaesserella parasuis strain SC1401

49.189

100

0.497
  ssb Neisseria meningitidis MC58

47.283

100

0.475
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.47

Multiple sequence alignment