Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CGQ01_RS13040 | Genome accession | NZ_CP022903 |
| Coordinates | 2452879..2453382 (-) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 187 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2431640..2457442 | 2452879..2453382 | within | 0 |
Gene organization within MGE regions
Location: 2431640..2457442
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGQ01_RS12875 (CGQ01_02317) | - | 2431640..2431903 (+) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| CGQ01_RS12880 (CGQ01_02318) | - | 2432040..2432612 (-) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| CGQ01_RS12885 (CGQ01_02319) | - | 2432793..2433161 (-) | 369 | WP_000849163.1 | YxeA family protein | - |
| CGQ01_RS12890 (CGQ01_02320) | selX | 2433530..2434141 (-) | 612 | WP_000475325.1 | staphylococcal enterotoxin-like toxin X | - |
| CGQ01_RS12895 | - | 2434347..2435060 (+) | 714 | Protein_2381 | tyrosine-type recombinase/integrase | - |
| CGQ01_RS12900 (CGQ01_02321) | - | 2435099..2436037 (+) | 939 | WP_001817700.1 | Abi family protein | - |
| CGQ01_RS12905 (CGQ01_02322) | - | 2436881..2438053 (-) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| CGQ01_RS15510 | - | 2438172..2438351 (-) | 180 | WP_000797954.1 | hypothetical protein | - |
| CGQ01_RS12920 (CGQ01_02323) | - | 2438367..2438879 (-) | 513 | WP_000813311.1 | hypothetical protein | - |
| CGQ01_RS12925 (CGQ01_02324) | - | 2438997..2439434 (-) | 438 | WP_073392942.1 | DUF3102 domain-containing protein | - |
| CGQ01_RS12930 (CGQ01_02325) | - | 2439576..2440544 (-) | 969 | WP_000801980.1 | Abi family protein | - |
| CGQ01_RS15515 | - | 2440691..2440774 (-) | 84 | Protein_2388 | terminase small subunit | - |
| CGQ01_RS12940 (CGQ01_02326) | - | 2440821..2441390 (-) | 570 | WP_001293071.1 | terminase small subunit | - |
| CGQ01_RS12945 | - | 2441387..2441599 (-) | 213 | WP_001656917.1 | hypothetical protein | - |
| CGQ01_RS12950 (CGQ01_02328) | - | 2441731..2442258 (-) | 528 | WP_031870369.1 | spore coat protein | - |
| CGQ01_RS12955 (CGQ01_02329) | - | 2442311..2442964 (-) | 654 | WP_000214170.1 | hypothetical protein | - |
| CGQ01_RS12960 (CGQ01_02330) | - | 2442995..2443339 (-) | 345 | WP_001288442.1 | hypothetical protein | - |
| CGQ01_RS12965 (CGQ01_02331) | - | 2444047..2444688 (-) | 642 | WP_031870361.1 | pathogenicity island protein | - |
| CGQ01_RS12970 (CGQ01_02332) | - | 2444690..2444953 (-) | 264 | WP_001003076.1 | hypothetical protein | - |
| CGQ01_RS12975 (CGQ01_02333) | - | 2444955..2445311 (-) | 357 | WP_001059599.1 | hypothetical protein | - |
| CGQ01_RS12980 (CGQ01_02334) | - | 2445554..2446924 (-) | 1371 | WP_000151864.1 | DNA primase family protein | - |
| CGQ01_RS12985 (CGQ01_02335) | - | 2446936..2447805 (-) | 870 | WP_031870360.1 | primase alpha helix C-terminal domain-containing protein | - |
| CGQ01_RS12990 (CGQ01_02336) | - | 2447870..2448196 (-) | 327 | WP_001103967.1 | DUF1474 family protein | - |
| CGQ01_RS12995 (CGQ01_02337) | - | 2448197..2448580 (-) | 384 | WP_000403837.1 | hypothetical protein | - |
| CGQ01_RS13000 (CGQ01_02338) | - | 2448582..2448785 (-) | 204 | WP_001231376.1 | hypothetical protein | - |
| CGQ01_RS13005 (CGQ01_02339) | - | 2448752..2448925 (-) | 174 | WP_000784892.1 | hypothetical protein | - |
| CGQ01_RS13010 (CGQ01_02340) | - | 2448937..2449209 (-) | 273 | WP_031870322.1 | helix-turn-helix domain-containing protein | - |
| CGQ01_RS13015 (CGQ01_02341) | - | 2449210..2449374 (-) | 165 | WP_001611932.1 | helix-turn-helix domain-containing protein | - |
| CGQ01_RS13020 (CGQ01_02342) | - | 2449523..2450146 (+) | 624 | WP_000230361.1 | helix-turn-helix transcriptional regulator | - |
| CGQ01_RS13025 (CGQ01_02343) | - | 2450307..2451521 (+) | 1215 | WP_000270135.1 | site-specific integrase | - |
| CGQ01_RS13030 (CGQ01_02344) | - | 2451634..2452353 (+) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| CGQ01_RS13035 (CGQ01_02345) | rpsR | 2452585..2452827 (-) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| CGQ01_RS13040 (CGQ01_02346) | ssbA | 2452879..2453382 (-) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| CGQ01_RS13045 (CGQ01_02347) | rpsF | 2453403..2453699 (-) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| CGQ01_RS13055 (CGQ01_02348) | - | 2453943..2454134 (+) | 192 | WP_001052484.1 | hypothetical protein | - |
| CGQ01_RS13060 (CGQ01_02349) | ychF | 2454220..2455317 (-) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| CGQ01_RS13065 (CGQ01_02350) | - | 2455329..2455532 (-) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| CGQ01_RS13070 (CGQ01_02351) | - | 2455562..2456443 (-) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| CGQ01_RS13075 (CGQ01_02352) | - | 2456597..2457442 (-) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=243172 CGQ01_RS13040 WP_000934799.1 2452879..2453382(-) (ssbA) [Staphylococcus aureus strain 187]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=243172 CGQ01_RS13040 WP_000934799.1 2452879..2453382(-) (ssbA) [Staphylococcus aureus strain 187]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |