Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CJZ70_RS20340 Genome accession   NZ_CP022890
Coordinates   3882817..3883335 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain DKU_NT_02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3877817..3888335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS20320 (CJZ70_20320) yyzM 3878891..3879097 (+) 207 WP_003226838.1 DUF951 family protein -
  CJZ70_RS20325 (CJZ70_20325) yyaE 3879148..3881151 (+) 2004 WP_095010799.1 molybdopterin-dependent oxidoreductase -
  CJZ70_RS20330 (CJZ70_20330) ychF 3881278..3882378 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  CJZ70_RS20335 (CJZ70_20335) rpsF 3882489..3882776 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  CJZ70_RS20340 (CJZ70_20340) ssbA 3882817..3883335 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  CJZ70_RS20345 (CJZ70_20345) rpsR 3883379..3883618 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  CJZ70_RS20350 (CJZ70_20350) xth 3883683..3884441 (+) 759 WP_003243194.1 exodeoxyribonuclease III -
  CJZ70_RS20355 (CJZ70_20355) ccpB 3884501..3885436 (+) 936 WP_069964447.1 transcriptional regulator CcpB -
  CJZ70_RS20360 (CJZ70_20360) yyaH 3885492..3885872 (+) 381 WP_003244460.1 VOC family protein -
  CJZ70_RS20365 (CJZ70_20365) maa 3885890..3886444 (+) 555 WP_033884396.1 sugar O-acetyltransferase -
  CJZ70_RS20370 (CJZ70_20370) yyaJ 3886478..3887833 (-) 1356 WP_029318525.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=242594 CJZ70_RS20340 WP_003219228.1 3882817..3883335(+) (ssbA) [Bacillus subtilis strain DKU_NT_02]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=242594 CJZ70_RS20340 WP_003219228.1 3882817..3883335(+) (ssbA) [Bacillus subtilis strain DKU_NT_02]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378

Multiple sequence alignment