Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ssp1_RS11535 Genome accession   NZ_CP022881
Coordinates   2375261..2375776 (-) Length   171 a.a.
NCBI ID   WP_002451520.1    Uniprot ID   A0A2T4Q0A0
Organism   Staphylococcus sp. M0911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2363841..2377291 2375261..2375776 within 0


Gene organization within MGE regions


Location: 2363841..2377291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ssp1_RS11450 (Ssp1_23090) - 2363841..2364401 (-) 561 WP_107536196.1 terminase small subunit -
  ssp1_RS11455 (Ssp1_23100) - 2364406..2364747 (-) 342 WP_107536195.1 pathogenicity island family protein -
  ssp1_RS11460 (Ssp1_23110) - 2364750..2365208 (-) 459 WP_107536194.1 pathogenicity island protein -
  ssp1_RS11465 (Ssp1_23120) - 2365270..2365920 (-) 651 WP_107536193.1 hypothetical protein -
  ssp1_RS11470 (Ssp1_23130) - 2365950..2366291 (-) 342 WP_107536192.1 pathogenicity island protein -
  ssp1_RS11475 (Ssp1_23140) - 2366701..2367342 (-) 642 WP_107536191.1 pathogenicity island protein -
  ssp1_RS11480 (Ssp1_23150) - 2367347..2367865 (-) 519 WP_107536190.1 hypothetical protein -
  ssp1_RS11485 (Ssp1_23160) - 2368177..2369877 (-) 1701 WP_107536189.1 DUF927 domain-containing protein -
  ssp1_RS11490 (Ssp1_23170) - 2369892..2370764 (-) 873 WP_107536188.1 primase alpha helix C-terminal domain-containing protein -
  ssp1_RS11495 (Ssp1_23180) - 2370855..2371160 (-) 306 WP_107536187.1 DUF1474 family protein -
  ssp1_RS11500 (Ssp1_23190) - 2371160..2371522 (-) 363 WP_118828227.1 pathogenicity island protein -
  ssp1_RS11505 (Ssp1_23200) - 2371524..2371736 (-) 213 WP_107536185.1 pathogenicity island protein -
  ssp1_RS11940 (Ssp1_23210) - 2371738..2371893 (-) 156 WP_162886120.1 hypothetical protein -
  ssp1_RS11510 (Ssp1_23220) - 2371909..2372181 (-) 273 WP_107536184.1 helix-turn-helix domain-containing protein -
  ssp1_RS11515 (Ssp1_23230) - 2372181..2372402 (-) 222 WP_107536183.1 helix-turn-helix transcriptional regulator -
  ssp1_RS11520 (Ssp1_23240) - 2372594..2373517 (+) 924 WP_107560731.1 helix-turn-helix transcriptional regulator -
  ssp1_RS11525 (Ssp1_23250) - 2373526..2374749 (+) 1224 WP_118828228.1 site-specific integrase -
  ssp1_RS11530 (Ssp1_23260) rpsR 2374976..2375218 (-) 243 WP_002451519.1 30S ribosomal protein S18 -
  ssp1_RS11535 (Ssp1_23270) ssbA 2375261..2375776 (-) 516 WP_002451520.1 single-stranded DNA-binding protein Machinery gene
  ssp1_RS11540 (Ssp1_23280) rpsF 2375798..2376094 (-) 297 WP_002451521.1 30S ribosomal protein S6 -
  ssp1_RS11545 (Ssp1_23290) - 2376470..2377291 (+) 822 WP_002451522.1 GH25 family lysozyme -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18884.43 Da        Isoelectric Point: 4.7410

>NTDB_id=242488 ssp1_RS11535 WP_002451520.1 2375261..2375776(-) (ssbA) [Staphylococcus sp. M0911]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSR
SYENQEGRRIFVTEVVCDSVQFLEPKNSQNGGGQRSQNNEFQDYGQGFGGQQSGQNTSYNNNSSRPNSNQSDNPFANANG
PIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=242488 ssp1_RS11535 WP_002451520.1 2375261..2375776(-) (ssbA) [Staphylococcus sp. M0911]
ATGTTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCAGAATACAGAACCACTCCCTCAGGCGTAAGTGTAGC
GACATTTACTCTAGCAGTTAATCGTACTTTCACGAATGCTCAAGGGGAACGCGAAGCAGATTTCATTAACTGTGTTGTTT
TTAGAAGACAAGCAGAAAATGTAAATAACTACTTATCTAAAGGTAGTTTAGCTGGCGTTGATGGTCGCATACAGTCACGT
AGTTATGAAAATCAAGAAGGTCGTCGTATCTTTGTTACTGAAGTCGTTTGTGACAGTGTTCAATTCCTTGAACCTAAGAA
TTCACAAAATGGCGGTGGCCAACGTTCACAAAACAACGAATTCCAAGACTATGGTCAAGGATTCGGTGGCCAACAATCAG
GACAAAATACTTCGTATAACAACAATTCATCAAGACCTAATTCAAATCAATCAGATAATCCATTTGCGAATGCGAACGGA
CCTATTGATATTAGTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4Q0A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.453

100

0.643
  ssb Latilactobacillus sakei subsp. sakei 23K

52.601

100

0.532
  ssb Glaesserella parasuis strain SC1401

36.872

100

0.386
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

61.988

0.374

Multiple sequence alignment