Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   STU_RS09835 Genome accession   NC_006448
Coordinates   62100..62690 (+) Length   196 a.a.
NCBI ID   WP_002949053.1    Uniprot ID   Q5M6H5
Organism   Streptococcus thermophilus LMG 18311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 57100..67690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STU_RS20920 - 58230..58685 (-) 456 Protein_43 DUF3021 domain-containing protein -
  STU_RS09815 (stu0052) - 58682..59073 (-) 392 Protein_44 LytTR family DNA-binding domain-containing protein -
  STU_RS09820 (stu0053) - 59297..59602 (+) 306 WP_011225281.1 hypothetical protein -
  STU_RS09825 (stu0054) hexB 59654..61597 (+) 1944 WP_011225282.1 DNA mismatch repair endonuclease MutL Machinery gene
  STU_RS09830 (stu0055) - 61727..61948 (+) 222 WP_041826940.1 hypothetical protein -
  STU_RS09835 (stu0056) ruvA 62100..62690 (+) 591 WP_002949053.1 Holliday junction branch migration protein RuvA Machinery gene
  STU_RS09840 (stu0057) - 62697..63251 (+) 555 WP_011225284.1 DNA-3-methyladenine glycosylase I -
  STU_RS09845 (stu0059) cinA 63347..64618 (+) 1272 WP_011225285.1 competence/damage-inducible protein A Machinery gene
  STU_RS09850 (stu0060) recA 64654..65808 (+) 1155 WP_002949056.1 recombinase RecA Machinery gene
  STU_RS09855 (stu0061) spx 65985..66383 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21699.98 Da        Isoelectric Point: 5.2834

>NTDB_id=24248 STU_RS09835 WP_002949053.1 62100..62690(+) (ruvA) [Streptococcus thermophilus LMG 18311]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKSTELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=24248 STU_RS09835 WP_002949053.1 62100..62690(+) (ruvA) [Streptococcus thermophilus LMG 18311]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAATCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M6H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66

100

0.673
  ruvA Streptococcus pneumoniae R6

66

100

0.673
  ruvA Streptococcus pneumoniae D39

66

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444

Multiple sequence alignment