Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | Kalk_RS06190 | Genome accession | NZ_CP022684 |
| Coordinates | 1457762..1458250 (-) | Length | 162 a.a. |
| NCBI ID | WP_101893372.1 | Uniprot ID | A0A2K9LKK3 |
| Organism | Ketobacter alkanivorans strain GI5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1452762..1463250
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Kalk_RS06170 (Kalk_06170) | - | 1453170..1453610 (+) | 441 | WP_101893368.1 | YkgJ family cysteine cluster protein | - |
| Kalk_RS06175 (Kalk_06175) | gspD | 1453707..1455773 (-) | 2067 | WP_158643338.1 | type II secretion system secretin GspD | - |
| Kalk_RS06180 (Kalk_06180) | - | 1455802..1456764 (-) | 963 | WP_158643339.1 | type II secretion system protein N | - |
| Kalk_RS06185 (Kalk_06185) | gspN | 1456890..1457639 (-) | 750 | WP_101893371.1 | type II secretion system protein N | - |
| Kalk_RS06190 (Kalk_06190) | ssb | 1457762..1458250 (-) | 489 | WP_101893372.1 | single-stranded DNA-binding protein | Machinery gene |
| Kalk_RS06195 (Kalk_06195) | - | 1458286..1459665 (-) | 1380 | WP_101893373.1 | MFS transporter | - |
| Kalk_RS06200 (Kalk_06200) | uvrA | 1459853..1462681 (+) | 2829 | WP_101893374.1 | excinuclease ABC subunit UvrA | - |
Sequence
Protein
Download Length: 162 a.a. Molecular weight: 17468.24 Da Isoelectric Point: 4.6777
>NTDB_id=241643 Kalk_RS06190 WP_101893372.1 1457762..1458250(-) (ssb) [Ketobacter alkanivorans strain GI5]
MAQRGVNKVILVGNLGQEPETRYLPSGGAVTNISIATSETWKDKNSGQMQERTEWHRVVFFNRLAEIAGEYLKKGTKVYI
EGALRTRKWQDQSGSDRYTTEIVASEMQMLDSRGGAGGGSDDGFSGYDQMPEARGSAPAPAASSSAPSPSPAGSDFEDDI
PF
MAQRGVNKVILVGNLGQEPETRYLPSGGAVTNISIATSETWKDKNSGQMQERTEWHRVVFFNRLAEIAGEYLKKGTKVYI
EGALRTRKWQDQSGSDRYTTEIVASEMQMLDSRGGAGGGSDDGFSGYDQMPEARGSAPAPAASSSAPSPSPAGSDFEDDI
PF
Nucleotide
Download Length: 489 bp
>NTDB_id=241643 Kalk_RS06190 WP_101893372.1 1457762..1458250(-) (ssb) [Ketobacter alkanivorans strain GI5]
ATGGCACAACGCGGAGTGAACAAGGTAATTTTGGTGGGCAATCTGGGGCAGGAGCCTGAAACTCGGTATCTGCCCAGTGG
CGGTGCTGTGACTAACATTTCAATTGCCACCAGTGAAACCTGGAAAGACAAGAATTCAGGCCAGATGCAGGAGCGCACGG
AATGGCATCGGGTGGTGTTTTTCAATCGCTTGGCTGAGATTGCTGGCGAATATCTAAAAAAGGGCACCAAAGTGTATATC
GAAGGTGCCCTGCGCACCCGTAAATGGCAGGATCAGAGCGGCTCGGATCGTTACACCACGGAAATCGTGGCGTCTGAAAT
GCAAATGCTGGATTCTCGTGGTGGTGCTGGCGGTGGCTCGGATGATGGATTTTCCGGTTATGACCAGATGCCTGAAGCGC
GGGGCTCAGCCCCTGCACCTGCGGCCAGCAGCAGTGCTCCCAGCCCGTCACCTGCGGGTTCAGATTTTGAAGACGATATC
CCGTTCTAA
ATGGCACAACGCGGAGTGAACAAGGTAATTTTGGTGGGCAATCTGGGGCAGGAGCCTGAAACTCGGTATCTGCCCAGTGG
CGGTGCTGTGACTAACATTTCAATTGCCACCAGTGAAACCTGGAAAGACAAGAATTCAGGCCAGATGCAGGAGCGCACGG
AATGGCATCGGGTGGTGTTTTTCAATCGCTTGGCTGAGATTGCTGGCGAATATCTAAAAAAGGGCACCAAAGTGTATATC
GAAGGTGCCCTGCGCACCCGTAAATGGCAGGATCAGAGCGGCTCGGATCGTTACACCACGGAAATCGTGGCGTCTGAAAT
GCAAATGCTGGATTCTCGTGGTGGTGCTGGCGGTGGCTCGGATGATGGATTTTCCGGTTATGACCAGATGCCTGAAGCGC
GGGGCTCAGCCCCTGCACCTGCGGCCAGCAGCAGTGCTCCCAGCCCGTCACCTGCGGGTTCAGATTTTGAAGACGATATC
CCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
54.494 |
100 |
0.599 |
| ssb | Glaesserella parasuis strain SC1401 |
48.045 |
100 |
0.531 |
| ssb | Neisseria gonorrhoeae MS11 |
48.555 |
100 |
0.519 |
| ssb | Neisseria meningitidis MC58 |
46.821 |
100 |
0.5 |