NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	C5Y81_RS08100	Genome accession	NZ_CP028470
Coordinates	1643384..1644070 (-)	Length	228 a.a.
NCBI ID	WP_000692886.1	Uniprot ID	-
Organism	Staphylococcus aureus strain IT4-R
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1638384..1649070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5Y81_RS08055 (C5Y81_08055)	rpmA	1639154..1639438 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
C5Y81_RS08060 (C5Y81_08060)	-	1639450..1639770 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
C5Y81_RS08065 (C5Y81_08065)	rplU	1639776..1640084 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
C5Y81_RS08070 (C5Y81_08070)	mreD	1640320..1640850 (-)	531	WP_001259930.1	rod shape-determining protein MreD	-
C5Y81_RS08075 (C5Y81_08075)	mreC	1640850..1641692 (-)	843	WP_000911038.1	rod shape-determining protein MreC	-
C5Y81_RS08080 (C5Y81_08080)	-	1641892..1642011 (-)	120	WP_000840602.1	hypothetical protein	-
C5Y81_RS08085 (C5Y81_08085)	-	1642085..1642558 (-)	474	WP_001236734.1	DUF4930 family protein	-
C5Y81_RS08090 (C5Y81_08090)	-	1642718..1642915 (+)	198	WP_000025835.1	hypothetical protein	-
C5Y81_RS08095 (C5Y81_08095)	-	1643032..1643316 (-)	285	WP_000171859.1	hypothetical protein	-
C5Y81_RS08100 (C5Y81_08100)	ysxA/radC	1643384..1644070 (-)	687	WP_000692886.1	DNA repair protein RadC	Machinery gene
C5Y81_RS08105 (C5Y81_08105)	-	1644067..1644774 (-)	708	WP_000261107.1	A24 family peptidase	-
C5Y81_RS08115 (C5Y81_08115)	-	1645044..1646315 (-)	1272	WP_001108346.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
C5Y81_RS08120 (C5Y81_08120)	-	1646328..1648958 (-)	2631	WP_000425346.1	valine--tRNA ligase	-

Sequence

Protein

Download Length: 228 a.a. Molecular weight: 25311.24 Da Isoelectric Point: 6.7572

                                >NTDB_id=241607 C5Y81_RS08100 WP_000692886.1 1643384..1644070(-) (ysxA/radC) [Staphylococcus aureus strain IT4-R]

MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI

TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI

AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide

Download Length: 687 bp

                                >NTDB_id=241607 C5Y81_RS08100 WP_000692886.1 1643384..1644070(-) (ysxA/radC) [Staphylococcus aureus strain IT4-R]

TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC

AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG

CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT

ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG

TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA

ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT

GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT

CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA

GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	52.679	98.246	0.518
radC	Streptococcus pneumoniae TIGR4	41.038	92.982	0.382
radC	Streptococcus gordonii str. Challis substr. CH1	39.908	95.614	0.382
radC	Streptococcus pneumoniae R6	40.566	92.982	0.377
radC	Streptococcus pneumoniae D39	40.566	92.982	0.377

Detailed information NTG0241607