Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CHF41_RS03365 Genome accession   NZ_CP022680
Coordinates   663342..663836 (+) Length   164 a.a.
NCBI ID   WP_119875985.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 658342..668836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS03345 - 658583..659470 (+) 888 WP_119875982.1 carbohydrate ABC transporter permease -
  CHF41_RS03350 - 659884..661497 (+) 1614 WP_119877126.1 ABC transporter substrate-binding protein -
  CHF41_RS03355 - 661517..662881 (+) 1365 WP_119875983.1 glycoside hydrolase family 32 protein -
  CHF41_RS03360 rpsF 663040..663330 (+) 291 WP_119875984.1 30S ribosomal protein S6 -
  CHF41_RS03365 ssb 663342..663836 (+) 495 WP_119875985.1 single-stranded DNA-binding protein Machinery gene
  CHF41_RS03370 rpsR 663867..664106 (+) 240 WP_002939250.1 30S ribosomal protein S18 -
  CHF41_RS03375 - 664251..664949 (-) 699 WP_119875986.1 hypothetical protein -
  CHF41_RS03380 - 665020..665673 (-) 654 WP_119875987.1 DUF1129 domain-containing protein -
  CHF41_RS03385 - 665692..666636 (-) 945 WP_119875988.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18256.05 Da        Isoelectric Point: 4.7400

>NTDB_id=241562 CHF41_RS03365 WP_119875985.1 663342..663836(+) (ssb) [Streptococcus respiraculi strain HTS25]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRVYVTEVVAENFQLLESRTAREGQGGGYQAGNSFAGGNEYNSPYQAPAQSTPNFARDESPFGTTNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=241562 CHF41_RS03365 WP_119875985.1 663342..663836(+) (ssb) [Streptococcus respiraculi strain HTS25]
ATGATCAATAATGTGGTACTAGTTGGTCGTATGACCCGCGATGCAGAACTTCGTTACACACCGTCGAACCAAGCCGTTGC
GACCTTTACACTTGCGGTCAACCGCAATTTTAAAAATCAAAACGGTGAGCGGGAAGCGGATTTTATTAATGTGGTAATTT
GGCGCCAGCAGGCTGAAAACTTGGCAAACTGGGCTAAAAAAGGTGCCTTGGTGGGAATTACTGGTCGTATTCAGACTCGT
AATTATGAAAATCAGCAAGGACAACGCGTTTACGTGACAGAAGTTGTTGCAGAAAATTTCCAATTGTTGGAAAGCCGTAC
TGCACGTGAAGGTCAAGGTGGAGGTTACCAAGCTGGCAATTCCTTTGCTGGTGGTAATGAGTATAATTCGCCATATCAAG
CACCTGCACAATCTACACCAAACTTTGCACGCGATGAAAGCCCATTTGGAACAACGAATCCGATGGACATTTCAGATGAT
GATTTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.963

66.463

0.372
  ssb Glaesserella parasuis strain SC1401

31.579

100

0.366

Multiple sequence alignment