Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   SM12261_RS09675 Genome accession   NZ_CP028414
Coordinates   679171..679386 (+) Length   71 a.a.
NCBI ID   WP_265094651.1    Uniprot ID   -
Organism   Streptococcus mitis NCTC 12261     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 674171..684386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SM12261_RS03635 - 674403..674768 (+) 366 WP_000981959.1 hypothetical protein -
  SM12261_RS03640 - 674758..675048 (+) 291 WP_001080187.1 DUF5960 family protein -
  SM12261_RS03645 (SM12261_0704) - 675343..675702 (+) 360 WP_000529547.1 SAG1252 family conjugative relaxosome accessory protein -
  SM12261_RS03650 (SM12261_0705) mobC 675712..676077 (+) 366 WP_000263039.1 plasmid mobilization relaxosome protein MobC -
  SM12261_RS03655 (SM12261_0706) - 676064..677926 (+) 1863 WP_000261797.1 SAG1250 family conjugative relaxase -
  SM12261_RS03660 (SM12261_0707) - 677970..678818 (-) 849 WP_000837479.1 helix-turn-helix domain-containing protein -
  SM12261_RS09675 comA 679171..679386 (+) 216 WP_265094651.1 ATP-binding cassette domain-containing protein Regulator
  SM12261_RS03670 (SM12261_0708) comA/nlmT 679379..679813 (+) 435 WP_135781820.1 ATP-binding cassette domain-containing protein Regulator
  SM12261_RS09480 (SM12261_0709) - 679826..679996 (+) 171 WP_000711945.1 hypothetical protein -
  SM12261_RS03680 (SM12261_0710) gdhA 680277..681623 (-) 1347 WP_000199543.1 NADP-specific glutamate dehydrogenase -
  SM12261_RS03685 (SM12261_0711) - 681864..682799 (+) 936 WP_000255154.1 dihydroorotate oxidase -
  SM12261_RS03690 (SM12261_0712) holA 682833..683870 (+) 1038 WP_135781821.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 7642.84 Da        Isoelectric Point: 9.8690

>NTDB_id=241176 SM12261_RS09675 WP_265094651.1 679171..679386(+) (comA) [Streptococcus mitis NCTC 12261]
MTIESGQRIALVGQPGSGKSTLSKIPSELYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSIA

Nucleotide


Download         Length: 216 bp        

>NTDB_id=241176 SM12261_RS09675 WP_265094651.1 679171..679386(+) (comA) [Streptococcus mitis NCTC 12261]
TTGACTATTGAGTCAGGACAGAGAATTGCACTAGTCGGTCAACCGGGGTCAGGAAAAAGTACGTTATCAAAAATACCATC
AGAATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAATATTAAGTC
AAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACAGAAGTATTGCTTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(1-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

42.857

98.592

0.423
  comA Streptococcus mitis NCTC 12261

42.857

98.592

0.423
  comA Streptococcus pneumoniae R6

41.429

98.592

0.408
  comA Streptococcus pneumoniae D39

41.429

98.592

0.408
  comA Streptococcus pneumoniae Rx1

41.429

98.592

0.408
  comA Streptococcus pneumoniae TIGR4

38.571

98.592

0.38
  comA Streptococcus gordonii str. Challis substr. CH1

37.143

98.592

0.366