Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   C7R96_RS15980 Genome accession   NZ_CP028381
Coordinates   3016701..3017438 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain RM10466     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3011701..3022438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7R96_RS15965 (C7R96_15965) clpC 3012155..3014728 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  C7R96_RS15970 (C7R96_15970) yfiH 3014858..3015589 (-) 732 WP_000040149.1 purine nucleoside phosphorylase YfiH -
  C7R96_RS15975 (C7R96_15975) rluD 3015586..3016566 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  C7R96_RS15980 (C7R96_15980) comL 3016701..3017438 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  C7R96_RS15990 (C7R96_15990) raiA 3017709..3018050 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  C7R96_RS15995 (C7R96_15995) pheL 3018154..3018201 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  C7R96_RS16000 (C7R96_16000) pheA 3018300..3019460 (+) 1161 WP_109996774.1 bifunctional chorismate mutase/prephenate dehydratase -
  C7R96_RS16005 (C7R96_16005) tyrA 3019503..3020624 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  C7R96_RS16010 (C7R96_16010) aroF 3020635..3021705 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  C7R96_RS16015 (C7R96_16015) yfiL 3021915..3022280 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=241044 C7R96_RS15980 WP_000197686.1 3016701..3017438(+) (comL) [Escherichia coli strain RM10466]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=241044 C7R96_RS15980 WP_000197686.1 3016701..3017438(+) (comL) [Escherichia coli strain RM10466]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment