Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   C6376_RS19565 Genome accession   NZ_CP028369
Coordinates   4368717..4369091 (-) Length   124 a.a.
NCBI ID   WP_107444611.1    Uniprot ID   -
Organism   Streptomyces sp. P3     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 4363717..4374091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6376_RS19550 (C6376_19540) - 4364034..4366133 (-) 2100 WP_107444609.1 ATP-binding protein -
  C6376_RS19555 (C6376_19545) - 4366130..4367623 (-) 1494 WP_216825594.1 glycosyltransferase -
  C6376_RS19560 (C6376_19550) - 4367620..4368720 (-) 1101 WP_107444610.1 HEAT repeat domain-containing protein -
  C6376_RS19565 (C6376_19555) chiS 4368717..4369091 (-) 375 WP_107444611.1 response regulator transcription factor Regulator
  C6376_RS19570 (C6376_19560) - 4369091..4369477 (-) 387 WP_107444612.1 response regulator -
  C6376_RS19575 - 4369606..4369903 (-) 298 Protein_3816 AAC(3) family N-acetyltransferase -
  C6376_RS19580 (C6376_19565) - 4370201..4370944 (+) 744 WP_107444613.1 metalloregulator ArsR/SmtB family transcription factor -
  C6376_RS19585 (C6376_19570) sufB 4370941..4372362 (+) 1422 WP_057581212.1 Fe-S cluster assembly protein SufB -
  C6376_RS19590 (C6376_19575) sufD 4372422..4373603 (+) 1182 WP_107444614.1 Fe-S cluster assembly protein SufD -
  C6376_RS19595 (C6376_19580) - 4373603..4373923 (+) 321 WP_107444615.1 non-heme iron oxygenase ferredoxin subunit -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13537.57 Da        Isoelectric Point: 4.4016

>NTDB_id=240863 C6376_RS19565 WP_107444611.1 4368717..4369091(-) (chiS) [Streptomyces sp. P3]
MARVLVADDDADIRDLVAFKLIQSGHQVTAVEDGMAALRTVREQPLDLVLLDIRMPGMSGLDVCRELRACEETASLPVIL
ITARSQEGDVELGFAAGADDYIVKPFSPRELSSRVTAVLTRVER

Nucleotide


Download         Length: 375 bp        

>NTDB_id=240863 C6376_RS19565 WP_107444611.1 4368717..4369091(-) (chiS) [Streptomyces sp. P3]
ATGGCTCGTGTCCTGGTAGCCGACGACGACGCCGACATTCGGGACCTCGTGGCGTTCAAGCTGATCCAGAGCGGTCACCA
GGTCACCGCAGTGGAGGACGGCATGGCCGCGCTGCGCACGGTGCGCGAGCAGCCGCTGGATCTCGTACTCCTCGACATCC
GGATGCCGGGGATGTCGGGGCTGGACGTGTGTCGGGAGCTGCGCGCCTGCGAGGAGACCGCGTCGCTGCCCGTCATCCTG
ATCACCGCCCGCTCCCAGGAGGGGGACGTCGAACTCGGCTTCGCCGCGGGCGCCGACGACTACATCGTCAAACCCTTCAG
CCCGCGCGAGCTGTCCAGCCGGGTCACCGCGGTGCTCACCCGGGTCGAGCGGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

44.915

95.161

0.427
  vicR Streptococcus mutans UA159

38.71

100

0.387
  scnR Streptococcus mutans UA159

38.333

96.774

0.371
  pilH Synechocystis sp. PCC 6803

38.655

95.968

0.371