Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CHR29_RS02850 Genome accession   NZ_CP022562
Coordinates   628346..628891 (+) Length   181 a.a.
NCBI ID   WP_016715325.1    Uniprot ID   A0AAP7KGL0
Organism   Pseudomonas monteilii strain B5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 623346..633891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHR29_RS02835 (CHR29_02815) bfr 623444..623908 (+) 465 WP_016715322.1 bacterioferritin -
  CHR29_RS02840 (CHR29_02820) uvrA 623978..626812 (-) 2835 WP_016715323.1 excinuclease ABC subunit UvrA -
  CHR29_RS02845 (CHR29_02825) - 626942..628336 (+) 1395 WP_016715324.1 MFS transporter -
  CHR29_RS02850 (CHR29_02830) ssb 628346..628891 (+) 546 WP_016715325.1 single-stranded DNA-binding protein Machinery gene
  CHR29_RS02855 (CHR29_02835) - 629104..630234 (+) 1131 WP_232860014.1 tyrosine-type recombinase/integrase -
  CHR29_RS02860 (CHR29_02840) - 630237..631781 (+) 1545 WP_232860015.1 site-specific integrase -
  CHR29_RS02865 (CHR29_02845) - 631774..633771 (+) 1998 WP_121757517.1 integrase -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20146.24 Da        Isoelectric Point: 5.9286

>NTDB_id=240815 CHR29_RS02850 WP_016715325.1 628346..628891(+) (ssb) [Pseudomonas monteilii strain B5]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQGGDPYNQGGGNYNQGGQQQQYNQTPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=240815 CHR29_RS02850 WP_016715325.1 628346..628891(+) (ssb) [Pseudomonas monteilii strain B5]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGCACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCTACCAGCGAGCAGTGGACCGACAAGCAGTCGGGCCAGAAGGTAGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAGATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGTGCTACATCGAA
GGCAAACTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTGGGCGGTCGTCCGCAGGGCCAGCAGGGCGGTGACCCGTACAACCAGGGTGGCGGCAACTACAACCAAG
GTGGTCAGCAGCAACAGTACAACCAGACCCCGCCGCGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCGGCG
CCGCAGCAGCCAGCGCCACAGCCGGCGGCTGACTTTGACAGCTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.831

100

0.575
  ssb Glaesserella parasuis strain SC1401

49.735

100

0.519
  ssb Neisseria gonorrhoeae MS11

48.37

100

0.492
  ssb Neisseria meningitidis MC58

48.634

100

0.492

Multiple sequence alignment