Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CHN49_RS02510 | Genome accession | NZ_CP022561 |
| Coordinates | 549258..549803 (+) | Length | 181 a.a. |
| NCBI ID | WP_003255446.1 | Uniprot ID | I7CBQ6 |
| Organism | Pseudomonas putida strain B4 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 544258..554803
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHN49_RS02495 (CHN49_02470) | bfr | 544353..544817 (+) | 465 | WP_003255449.1 | bacterioferritin | - |
| CHN49_RS02500 (CHN49_02475) | uvrA | 544890..547724 (-) | 2835 | WP_014860903.1 | excinuclease ABC subunit UvrA | - |
| CHN49_RS02505 (CHN49_02480) | - | 547854..549248 (+) | 1395 | WP_121782792.1 | MFS transporter | - |
| CHN49_RS02510 (CHN49_02485) | ssb | 549258..549803 (+) | 546 | WP_003255446.1 | single-stranded DNA-binding protein | Machinery gene |
| CHN49_RS02515 (CHN49_02490) | - | 549894..551276 (-) | 1383 | WP_003255445.1 | PLP-dependent aminotransferase family protein | - |
| CHN49_RS02520 (CHN49_02495) | - | 551477..552262 (+) | 786 | WP_003255443.1 | TSUP family transporter | - |
| CHN49_RS02525 (CHN49_02500) | - | 552284..553045 (+) | 762 | WP_003255442.1 | SDR family NAD(P)-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 181 a.a. Molecular weight: 20059.16 Da Isoelectric Point: 5.9286
>NTDB_id=240789 CHN49_RS02510 WP_003255446.1 549258..549803(+) (ssb) [Pseudomonas putida strain B4]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQCYIE
GKLQTREWEKDGIKRYTTEIIVDINGTMQLLGGRPQGQQQGGDPYNQGGGNYGGGQQQQYNQAPPRQQAQRPQQAPQRPA
PQQPAPQPAADFDSFDDDIPF
Nucleotide
Download Length: 546 bp
>NTDB_id=240789 CHN49_RS02510 WP_003255446.1 549258..549803(+) (ssb) [Pseudomonas putida strain B4]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGTTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGT
GGCACCGTGTGTCGCTGTTCGGCAAGGTTGCCGAAATCGCTGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCAAGTTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGACATCAACGGCAC
CATGCAGCTGCTCGGCGGTCGTCCGCAAGGCCAGCAGCAGGGCGGCGACCCATACAACCAGGGTGGCGGCAATTACGGTG
GCGGCCAGCAGCAACAGTACAACCAGGCACCGCCACGCCAGCAGGCCCAGCGCCCGCAACAGGCCCCTCAGCGCCCAGCG
CCGCAACAGCCTGCGCCGCAGCCGGCGGCTGACTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
56.831 |
100 |
0.575 |
| ssb | Glaesserella parasuis strain SC1401 |
47.12 |
100 |
0.497 |
| ssb | Neisseria meningitidis MC58 |
48.634 |
100 |
0.492 |
| ssb | Neisseria gonorrhoeae MS11 |
48.634 |
100 |
0.492 |