Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C7Y67_RS09270 Genome accession   NZ_CP028342
Coordinates   1845330..1846751 (+) Length   473 a.a.
NCBI ID   WP_025546269.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate R13     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840330..1851751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS09250 (C7Y67_09245) - 1840389..1841141 (-) 753 WP_053321193.1 adenosylcobinamide-GDP ribazoletransferase -
  C7Y67_RS09255 (C7Y67_09250) cobT 1841186..1842229 (-) 1044 WP_053300465.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  C7Y67_RS09260 (C7Y67_09255) - 1842913..1843608 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  C7Y67_RS09265 (C7Y67_09260) - 1843801..1845174 (+) 1374 WP_108744953.1 L-cystine transporter -
  C7Y67_RS09270 (C7Y67_09265) sbcB 1845330..1846751 (+) 1422 WP_025546269.1 exodeoxyribonuclease I Machinery gene
  C7Y67_RS09275 (C7Y67_09270) - 1846807..1847181 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  C7Y67_RS09280 (C7Y67_09275) - 1847183..1847860 (+) 678 WP_025522457.1 LrgB family protein -
  C7Y67_RS09285 (C7Y67_09280) cdd 1848225..1849112 (+) 888 WP_020840481.1 cytidine deaminase -
  C7Y67_RS09290 (C7Y67_09285) purT 1849260..1850435 (+) 1176 WP_108744954.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  C7Y67_RS09295 (C7Y67_09290) - 1850537..1851187 (-) 651 WP_025546267.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54665.02 Da        Isoelectric Point: 4.9831

>NTDB_id=240770 C7Y67_RS09270 WP_025546269.1 1845330..1846751(+) (sbcB) [Vibrio parahaemolyticus isolate R13]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQRPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=240770 C7Y67_RS09270 WP_025546269.1 1845330..1846751(+) (sbcB) [Vibrio parahaemolyticus isolate R13]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACCAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTGACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTTGATGTATTGCGAGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATAGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCGCCCTGAGATTCGAGAAAAACTAATTGG
CTTGTTCTCTATCGAGCGTCAGTTTGAAAAGAGCGATGATGTAGACACTCAACTTTACGATGGTTTTTTCTCTCCAGCCG
ATCGCGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCGAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (ExoI_SH3)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.704

100

0.797

Multiple sequence alignment