Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C7M29_RS11845 Genome accession   NZ_CP028217
Coordinates   2305679..2306374 (+) Length   231 a.a.
NCBI ID   WP_021480240.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300679..2311374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS11825 (C7M29_02327) folC 2301610..2302902 (+) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M29_RS11830 (C7M29_02328) comC 2303042..2303788 (+) 747 WP_088467305.1 A24 family peptidase Machinery gene
  C7M29_RS11835 (C7M29_02329) spoIIB 2303922..2304920 (+) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  C7M29_RS11840 (C7M29_02330) maf 2305073..2305642 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C7M29_RS11845 (C7M29_02331) ysxA/radC 2305679..2306374 (+) 696 WP_021480240.1 DNA repair protein RadC Machinery gene
  C7M29_RS11850 (C7M29_02332) mreB 2306466..2307479 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M29_RS11855 (C7M29_02333) mreC 2307510..2308382 (+) 873 WP_003222609.1 rod shape-determining protein MreC -
  C7M29_RS11860 (C7M29_02334) mreD 2308379..2308897 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  C7M29_RS11865 (C7M29_02335) minC 2308950..2309630 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  C7M29_RS11870 (C7M29_02336) minD 2309632..2310438 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26137.47 Da        Isoelectric Point: 7.9141

>NTDB_id=240362 C7M29_RS11845 WP_021480240.1 2305679..2306374(+) (ysxA/radC) [Bacillus subtilis strain SRCM102751]
MVIQDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=240362 C7M29_RS11845 WP_021480240.1 2305679..2306374(+) (ysxA/radC) [Bacillus subtilis strain SRCM102751]
TTGGTCATACAAGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCTGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTCGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATTTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment