Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CGZ47_RS00040 | Genome accession | NZ_CP022475 |
| Coordinates | 9947..10459 (+) | Length | 170 a.a. |
| NCBI ID | WP_076786702.1 | Uniprot ID | A0A1X7QGR0 |
| Organism | Latilactobacillus curvatus strain KG6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4947..15459
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CGZ47_RS00030 (CGZ47_00030) | gyrA | 6782..9368 (+) | 2587 | Protein_5 | DNA gyrase subunit A | - |
| CGZ47_RS00035 (CGZ47_00035) | rpsF | 9611..9907 (+) | 297 | WP_076786704.1 | 30S ribosomal protein S6 | - |
| CGZ47_RS00040 (CGZ47_00040) | ssb | 9947..10459 (+) | 513 | WP_076786702.1 | single-stranded DNA-binding protein | Machinery gene |
| CGZ47_RS00045 (CGZ47_00045) | rpsR | 10490..10729 (+) | 240 | WP_004265822.1 | 30S ribosomal protein S18 | - |
| CGZ47_RS00050 (CGZ47_00050) | - | 10946..12976 (+) | 2031 | WP_076786700.1 | DHH family phosphoesterase | - |
| CGZ47_RS00055 (CGZ47_00055) | rplI | 12998..13450 (+) | 453 | WP_004265788.1 | 50S ribosomal protein L9 | - |
| CGZ47_RS00060 (CGZ47_00060) | dnaB | 13595..14998 (+) | 1404 | WP_198331787.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18594.13 Da Isoelectric Point: 4.6856
>NTDB_id=239822 CGZ47_RS00040 WP_076786702.1 9947..10459(+) (ssb) [Latilactobacillus curvatus strain KG6]
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
MINRVVLVGRLTRDVDLRYTSSGAAVGTFSIAVNRQFTNANGDREADFINCVIWRKSAENFANFTKKGSLVGVDGRLQTR
NYENQQGQRVYVTEVVVDNFSLLESRTTTEQRQGDGASQNFNSNQSNGSQQSGFTSPQQSGNPSAANNTQADPFANNGQA
IDISDDDLPF
Nucleotide
Download Length: 513 bp
>NTDB_id=239822 CGZ47_RS00040 WP_076786702.1 9947..10459(+) (ssb) [Latilactobacillus curvatus strain KG6]
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
ATGATTAATCGAGTTGTACTCGTTGGTCGGCTAACACGCGATGTTGACTTACGTTACACTTCTAGTGGTGCTGCAGTTGG
GACTTTCTCAATCGCAGTGAACCGTCAATTCACGAATGCCAATGGTGATCGTGAAGCAGACTTTATCAACTGTGTCATCT
GGCGTAAATCAGCGGAAAATTTCGCTAATTTCACTAAGAAAGGCTCACTAGTCGGAGTTGATGGCCGTCTACAAACGAGA
AATTATGAAAACCAACAAGGTCAACGTGTATACGTAACCGAAGTGGTCGTTGATAACTTCTCATTGTTAGAATCACGGAC
AACAACGGAGCAACGGCAAGGGGATGGCGCAAGCCAAAACTTTAACAGCAATCAAAGCAATGGTAGCCAACAATCTGGAT
TTACCAGCCCTCAACAATCGGGTAATCCATCAGCTGCAAATAACACTCAAGCCGATCCATTTGCAAATAATGGTCAAGCA
ATTGATATTTCAGATGATGATTTACCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
97.647 |
100 |
0.976 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56 |
100 |
0.576 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
62.353 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
33.155 |
100 |
0.365 |