Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   CG419_RS07775 Genome accession   NZ_CP022474
Coordinates   1558215..1559549 (-) Length   444 a.a.
NCBI ID   WP_244185434.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain MRS6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1553215..1564549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG419_RS07760 (CG419_07760) secA 1554279..1556642 (-) 2364 WP_004270228.1 preprotein translocase subunit SecA -
  CG419_RS07765 (CG419_07765) raiA 1556870..1557415 (-) 546 WP_004270226.1 ribosome-associated translation inhibitor RaiA -
  CG419_RS07770 (CG419_07770) comFC 1557541..1558071 (-) 531 WP_157776724.1 ComF family protein Machinery gene
  CG419_RS07775 (CG419_07775) comFA 1558215..1559549 (-) 1335 WP_244185434.1 DEAD/DEAH box helicase Machinery gene
  CG419_RS07780 (CG419_07780) - 1559606..1560268 (+) 663 WP_089556969.1 YigZ family protein -
  CG419_RS07785 (CG419_07785) - 1560295..1561383 (-) 1089 WP_004270225.1 MraY family glycosyltransferase -
  CG419_RS07790 (CG419_07790) hemH 1561493..1562434 (-) 942 WP_089556970.1 ferrochelatase -
  CG419_RS07795 (CG419_07795) rny 1562527..1564089 (-) 1563 WP_004270250.1 ribonuclease Y -

Sequence

Protein


Download         Length: 444 a.a.        Molecular weight: 49807.97 Da        Isoelectric Point: 9.4775

>NTDB_id=239811 CG419_RS07775 WP_244185434.1 1558215..1559549(-) (comFA) [Latilactobacillus curvatus strain MRS6]
MMAKQLAYGRQWSATQLSTVMNNYSLPQIKQRPAFQIVNQRLVCQRCGQVVKEQARLPDGRYYCASCLTFGRLVEGDQLV
YVPECNLFESIVEPLTWSGTLTPFQAQAAKQIVAVITKQQRHVLTAVTGAGKTEMLFQGIATALANGQRVCVAAPRVAVC
LELYPRLQAAFANTPIMLMHGEQTAPYRYTPLVVCTTHQLFKFYQAFDTVIVDEVDAFPFVNNPQLEMAVKQACKPCCAL
IYLTATPTVKLRHAINTGDLTGSELPIRFHGHLLPEPHCYPLFTWRRSVKRHQLPSVMRNLLRKCLQEQRLLLFVPQVRD
LEAVQQSVVRALPHITVNTVHAGDPNQLDKIAAFRAGCGDVLITTTVLERGVTFKNIAVFVLGAEHVVFTESVLVQIAGR
AGRQQEHAANPVYFFYADYTVAIQRACQQIKRQNRKGRRLQSTV

Nucleotide


Download         Length: 1335 bp        

>NTDB_id=239811 CG419_RS07775 WP_244185434.1 1558215..1559549(-) (comFA) [Latilactobacillus curvatus strain MRS6]
ATGATGGCAAAACAACTTGCTTATGGTCGTCAGTGGAGTGCCACCCAATTGAGTACCGTTATGAATAATTATAGTTTACC
ACAGATTAAACAGCGACCAGCGTTTCAAATAGTTAATCAGCGTCTGGTGTGTCAACGGTGTGGACAAGTGGTGAAAGAGC
AAGCCCGCTTACCTGATGGTCGGTATTATTGTGCTTCTTGCTTGACCTTTGGGCGGTTAGTGGAAGGGGATCAGTTGGTT
TACGTGCCTGAATGCAATCTGTTTGAGTCGATCGTAGAACCGCTAACTTGGTCGGGGACACTAACCCCTTTTCAAGCACA
AGCCGCAAAGCAGATTGTTGCGGTCATTACCAAGCAACAACGCCATGTCTTAACTGCAGTGACCGGTGCTGGTAAAACTG
AGATGTTATTTCAAGGCATTGCGACGGCTTTAGCTAATGGGCAGCGTGTGTGTGTTGCTGCGCCGCGGGTGGCGGTTTGT
TTAGAACTCTATCCGCGCTTGCAAGCAGCGTTTGCTAACACACCAATTATGTTGATGCATGGGGAACAGACTGCGCCTTA
CCGGTATACGCCGTTAGTTGTTTGTACAACCCATCAGTTATTTAAGTTTTATCAGGCATTTGACACTGTCATTGTCGATG
AGGTTGATGCGTTCCCATTTGTCAATAATCCCCAGCTTGAGATGGCTGTTAAACAGGCGTGTAAGCCATGCTGTGCATTG
ATCTATCTGACGGCGACGCCAACTGTAAAGTTGCGCCATGCGATTAATACGGGGGATTTAACGGGTAGTGAGCTACCAAT
TCGCTTTCATGGTCACTTATTACCTGAACCGCATTGCTATCCCTTGTTTACGTGGCGGCGTTCAGTTAAACGGCATCAGT
TACCATCCGTGATGCGCAACTTACTCAGGAAGTGTCTTCAAGAACAACGCTTATTATTATTTGTGCCACAGGTAAGGGAT
TTAGAGGCGGTTCAGCAGAGCGTTGTTCGGGCATTGCCACACATTACAGTGAACACGGTACATGCTGGCGATCCTAATCA
ATTAGACAAGATAGCGGCCTTTAGAGCAGGATGCGGGGACGTGCTGATTACGACGACAGTTCTAGAACGAGGCGTAACGT
TTAAAAATATTGCAGTGTTTGTTCTTGGTGCAGAACACGTGGTCTTCACTGAATCAGTGCTTGTACAGATTGCTGGCCGA
GCCGGACGACAGCAAGAGCATGCTGCCAATCCGGTTTATTTTTTCTATGCGGATTACACGGTCGCTATTCAGCGTGCGTG
TCAACAAATTAAACGACAAAATCGAAAAGGACGGCGATTACAATCCACTGTTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(101-248)

Helicase conserved C-terminal domain (Helicase_C)

(298-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Latilactobacillus sakei subsp. sakei 23K

65.909

99.099

0.653
  comFA/cflA Streptococcus mitis NCTC 12261

40.488

92.342

0.374
  comFA/cflA Streptococcus pneumoniae TIGR4

40.291

92.793

0.374
  comFA/cflA Streptococcus pneumoniae Rx1

40.049

92.793

0.372
  comFA/cflA Streptococcus pneumoniae D39

40.049

92.793

0.372
  comFA/cflA Streptococcus pneumoniae R6

40.049

92.793

0.372
  comFA/cflA Streptococcus mitis SK321

39.806

92.793

0.369
  comFA Bacillus subtilis subsp. subtilis str. 168

38.228

96.622

0.369

Multiple sequence alignment