Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   C7M23_RS10435 Genome accession   NZ_CP028209
Coordinates   2031852..2032547 (+) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis strain SRCM102745     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2026852..2037547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS10415 (C7M23_02048) folC 2027783..2029075 (+) 1293 WP_076458221.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M23_RS10420 (C7M23_02049) comC 2029215..2029961 (+) 747 WP_131228346.1 A24 family peptidase Machinery gene
  C7M23_RS10425 (C7M23_02050) spoIIB 2030095..2031093 (+) 999 WP_103803774.1 stage II sporulation protein SpoIIB -
  C7M23_RS10430 (C7M23_02051) maf 2031246..2031815 (+) 570 WP_049141066.1 Maf family nucleotide pyrophosphatase -
  C7M23_RS10435 (C7M23_02052) ysxA/radC 2031852..2032547 (+) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  C7M23_RS10440 (C7M23_02053) mreB 2032639..2033652 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M23_RS10445 (C7M23_02054) mreC 2033683..2034555 (+) 873 WP_009967915.1 rod shape-determining protein MreC -
  C7M23_RS10450 (C7M23_02055) mreD 2034552..2035070 (+) 519 WP_004398811.1 rod shape-determining protein MreD -
  C7M23_RS10455 (C7M23_02056) minC 2035123..2035803 (+) 681 WP_004398901.1 septum site-determining protein MinC -
  C7M23_RS10460 (C7M23_02057) minD 2035805..2036611 (+) 807 WP_014664846.1 septum site-determining protein MinD -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=239746 C7M23_RS10435 WP_003246034.1 2031852..2032547(+) (ysxA/radC) [Bacillus subtilis strain SRCM102745]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=239746 C7M23_RS10435 WP_003246034.1 2031852..2032547(+) (ysxA/radC) [Bacillus subtilis strain SRCM102745]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGGGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCAGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424