Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   CGZ53_RS04890 Genome accession   NZ_CP022435
Coordinates   939988..941298 (-) Length   436 a.a.
NCBI ID   WP_100912050.1    Uniprot ID   -
Organism   Streptococcus uberis strain NZ01     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 934988..946298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CGZ53_RS04860 (CGZ53_04855) - 935512..935898 (-) 387 WP_307935650.1 cytidine deaminase -
  CGZ53_RS04865 (CGZ53_04860) deoC 935888..936550 (-) 663 WP_100912048.1 deoxyribose-phosphate aldolase -
  CGZ53_RS04870 (CGZ53_04865) - 936561..937838 (-) 1278 WP_100912049.1 pyrimidine-nucleoside phosphorylase -
  CGZ53_RS04875 (CGZ53_04870) - 937835..938425 (-) 591 WP_012658453.1 class I SAM-dependent methyltransferase -
  CGZ53_RS04880 (CGZ53_04875) coaA 938689..939609 (+) 921 WP_046389364.1 type I pantothenate kinase -
  CGZ53_RS04885 (CGZ53_04880) rpsT 939669..939911 (+) 243 WP_160463058.1 30S ribosomal protein S20 -
  CGZ53_RS04890 (CGZ53_04885) ciaH 939988..941298 (-) 1311 WP_100912050.1 sensor histidine kinase Regulator
  CGZ53_RS04895 (CGZ53_04890) ciaR 941291..941965 (-) 675 WP_012658457.1 response regulator transcription factor Regulator
  CGZ53_RS04900 (CGZ53_04895) - 942087..944624 (-) 2538 WP_100912051.1 M1 family metallopeptidase -
  CGZ53_RS04905 (CGZ53_04900) phoU 944694..945347 (-) 654 WP_012658459.1 phosphate signaling complex protein PhoU -
  CGZ53_RS04910 (CGZ53_04905) pstB 945367..946125 (-) 759 WP_012658460.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 436 a.a.        Molecular weight: 50077.12 Da        Isoelectric Point: 7.6210

>NTDB_id=239385 CGZ53_RS04890 WP_100912050.1 939988..941298(-) (ciaH) [Streptococcus uberis strain NZ01]
MTKYKELLKSDNFNHFSHYFSVFTGIFAVMTFIILQIMKFGVYSSVDSSLLTVAKNSENYTNKTMERISSFYFDNQSGHF
KASTEAFKIKNDNEPVANTDILLFSSNGIVINSFDALSNFQNFTLNKNELNTIQTQKLVNYYGHEEKFHTITVRVHSKNY
PAIAYMMAVVNVEQSEKTNERYEKFIIIVMIVFWLISIIASIYLANWSSKPIIESYEKQKMFVENASHELRTPLAVLQNR
LESLFRKPNESILDNSEAIASSLDEVRNMRILTTNLLNLARRDDGIKPDWEEIDAQFFNSIFENYSLIAEENGKSFQFDN
QVHRKVKTDKALLKQLLTILFDNAIKYTDADGEIEIQVSTGDKHLYLTVLDNGPGISDIDKKKIFDRFYRVDKARTRSKG
GFGLGLALAQQIVQSLKGSIVVKDNRPKGTIFEVKF

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=239385 CGZ53_RS04890 WP_100912050.1 939988..941298(-) (ciaH) [Streptococcus uberis strain NZ01]
ATGACTAAATATAAAGAATTACTTAAATCCGATAATTTCAATCACTTTTCCCATTATTTTTCTGTATTTACGGGCATTTT
TGCGGTTATGACTTTCATTATCCTTCAGATCATGAAATTTGGTGTCTATTCATCAGTTGATAGTAGTTTATTGACAGTTG
CCAAGAATTCAGAGAATTATACCAACAAGACCATGGAGAGGATTTCTTCCTTTTATTTTGATAACCAAAGTGGTCATTTT
AAAGCTAGTACAGAAGCATTTAAAATAAAGAATGATAATGAGCCGGTTGCAAATACAGATATCTTACTCTTTAGTTCAAA
CGGTATTGTTATCAACAGTTTTGATGCGCTTTCCAATTTTCAAAATTTTACGCTGAATAAAAACGAATTAAATACGATTC
AAACGCAAAAATTAGTCAATTACTATGGCCATGAAGAAAAATTTCATACCATTACAGTAAGGGTACATTCCAAAAACTAC
CCTGCAATCGCCTATATGATGGCCGTAGTAAATGTTGAACAGTCAGAAAAAACAAATGAACGATATGAGAAATTTATCAT
AATCGTTATGATTGTGTTCTGGCTCATTTCCATTATTGCTAGTATATATCTGGCAAATTGGAGTAGTAAGCCTATCATTG
AGAGCTATGAAAAACAAAAAATGTTTGTTGAAAATGCCAGTCATGAATTAAGGACGCCTTTGGCCGTTTTACAGAATCGT
TTAGAAAGTTTATTTCGAAAGCCAAACGAGAGTATTCTTGATAATAGCGAAGCCATTGCGTCAAGCTTAGATGAAGTCAG
AAATATGAGAATACTAACCACTAATCTTCTTAATCTTGCGAGACGTGATGATGGTATAAAACCCGACTGGGAAGAAATTG
ATGCTCAATTCTTTAATAGTATTTTTGAAAATTATAGCCTTATTGCAGAAGAAAATGGCAAATCATTCCAGTTTGATAAT
CAAGTTCATAGAAAAGTAAAAACTGATAAAGCTCTACTCAAACAATTGTTAACGATTCTTTTTGACAATGCCATAAAATA
TACTGATGCTGACGGTGAGATTGAAATACAGGTTTCAACTGGGGATAAACATCTCTATCTTACTGTCTTAGATAATGGAC
CTGGCATTAGTGATATTGACAAAAAGAAAATTTTTGACAGATTCTATAGAGTCGATAAAGCCAGAACAAGAAGTAAGGGT
GGATTTGGATTAGGATTAGCCTTAGCTCAACAAATCGTTCAATCTTTAAAAGGAAGTATTGTCGTTAAGGATAATAGGCC
TAAAGGGACAATTTTTGAAGTCAAATTTTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(329-435)

His Kinase A (phospho-acceptor) domain (HisKA)

(220-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

57.11

100

0.571
  ciaH Streptococcus pneumoniae Rx1

50.805

99.771

0.507
  ciaH Streptococcus pneumoniae D39

50.805

99.771

0.507
  ciaH Streptococcus pneumoniae R6

50.805

99.771

0.507
  ciaH Streptococcus pneumoniae TIGR4

50.805

99.771

0.507

Multiple sequence alignment